BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p 16 6.9
ssc-miR-6782-3p MIMAT0037064 Sus scrofa miR-6782-3p 14 27
efu-miR-9310 MIMAT0034983 Eptesicus fuscus miR-9310 14 27
eca-miR-8933 MIMAT0034462 Equus caballus miR-8933 14 27
cfa-miR-8851 MIMAT0034346 Canis familiaris miR-8851 14 27
bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p 14 27
mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica miR-7394b-3p 14 27
mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p 14 27
mmu-miR-6988-3p MIMAT0027879 Mus musculus miR-6988-3p 14 27
hsa-miR-6821-3p MIMAT0027543 Homo sapiens miR-6821-3p 14 27
oar-miR-1193-3p MIMAT0019270 Ovis aries miR-1193-3p 14 27
oar-miR-370-5p MIMAT0019243 Ovis aries miR-370-5p 14 27
rno-miR-1193-3p MIMAT0017859 Rattus norvegicus miR-1193-3p 14 27
eca-miR-1193 MIMAT0013124 Equus caballus miR-1193 14 27
dps-miR-2552-5p MIMAT0012364 Drosophila pseudoobscura miR-2552-5p 14 27
dps-miR-2550-3p MIMAT0012361 Drosophila pseudoobscura miR-2550-3p 14 27
bta-miR-1193 MIMAT0009965 Bos taurus miR-1193 14 27
mml-miR-370-5p MIMAT0026857 Macaca mulatta miR-370-5p 14 27
oan-miR-1421x-5p MIMAT0007242 Ornithorhynchus anatinus miR-1421x-5p 14 27
oan-miR-1421b-5p MIMAT0006965 Ornithorhynchus anatinus miR-1421b-5p 14 27
mmu-miR-1193-3p MIMAT0005851 Mus musculus miR-1193-3p 14 27
rno-miR-370-5p MIMAT0017202 Rattus norvegicus miR-370-5p 14 27
mmu-miR-370-5p MIMAT0017174 Mus musculus miR-370-5p 14 27
hsa-miR-370-5p MIMAT0026483 Homo sapiens miR-370-5p 14 27
>mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtgacctc 8
||||||||
Sbjct: 1 gtgacctc 8
>ssc-miR-6782-3p MIMAT0037064 Sus scrofa miR-6782-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>efu-miR-9310 MIMAT0034983 Eptesicus fuscus miR-9310
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>eca-miR-8933 MIMAT0034462 Equus caballus miR-8933
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgacctc 8
|||||||
Sbjct: 7 tgacctc 1
>cfa-miR-8851 MIMAT0034346 Canis familiaris miR-8851
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgacctc 8
|||||||
Sbjct: 7 tgacctc 1
>mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica
miR-7394b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgacct 7
|||||||
Sbjct: 2 gtgacct 8
>mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgacct 7
|||||||
Sbjct: 2 gtgacct 8
>mmu-miR-6988-3p MIMAT0027879 Mus musculus miR-6988-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>hsa-miR-6821-3p MIMAT0027543 Homo sapiens miR-6821-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>oar-miR-1193-3p MIMAT0019270 Ovis aries miR-1193-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>oar-miR-370-5p MIMAT0019243 Ovis aries miR-370-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>rno-miR-1193-3p MIMAT0017859 Rattus norvegicus miR-1193-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>eca-miR-1193 MIMAT0013124 Equus caballus miR-1193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>dps-miR-2552-5p MIMAT0012364 Drosophila pseudoobscura
miR-2552-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgacctc 8
|||||||
Sbjct: 8 tgacctc 2
>dps-miR-2550-3p MIMAT0012361 Drosophila pseudoobscura
miR-2550-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgacctc 8
|||||||
Sbjct: 1 tgacctc 7
>bta-miR-1193 MIMAT0009965 Bos taurus miR-1193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>mml-miR-370-5p MIMAT0026857 Macaca mulatta miR-370-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>oan-miR-1421x-5p MIMAT0007242 Ornithorhynchus anatinus
miR-1421x-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>oan-miR-1421b-5p MIMAT0006965 Ornithorhynchus anatinus
miR-1421b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgacctc 8
|||||||
Sbjct: 8 tgacctc 2
>mmu-miR-1193-3p MIMAT0005851 Mus musculus miR-1193-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>rno-miR-370-5p MIMAT0017202 Rattus norvegicus miR-370-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>mmu-miR-370-5p MIMAT0017174 Mus musculus miR-370-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
>hsa-miR-370-5p MIMAT0026483 Homo sapiens miR-370-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgacct 7
|||||||
Sbjct: 8 gtgacct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 206
Number of extensions: 181
Number of successful extensions: 117
Number of sequences better than 100.0: 24
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
