BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9393-5p MIMAT0035330 Gyrodactylus salaris miR-9393-5p 14 20
mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p 14 20
mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p 14 20
mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p 14 20
hsa-miR-6834-5p MIMAT0027568 Homo sapiens miR-6834-5p 14 20
bta-miR-2309 MIMAT0011821 Bos taurus miR-2309 14 20
hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p 14 20
ppt-miR1062 MIMAT0005181 Physcomitrella patens miR1062 14 20
dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p 14 20
dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p 14 20
dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p 14 20
dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p 14 20
dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p 14 20
dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p 14 20
dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p 14 20
dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p 14 20
dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p 14 20
dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p 14 20
chi-miR-423-5p MIMAT0036220 Capra hircus miR-423-5p 12 80
chi-miR-1224 MIMAT0035919 Capra hircus miR-1224 12 80
bdi-miR9488 MIMAT0035495 Brachypodium distachyon miR9488 12 80
efu-miR-423 MIMAT0035024 Eptesicus fuscus miR-423 12 80
eca-miR-9077 MIMAT0034622 Equus caballus miR-9077 12 80
gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646 12 80
mdo-miR-1643a-5p MIMAT0028594 Monodelphis domestica miR-1643a-5p 12 80
mmu-miR-7068-5p MIMAT0028042 Mus musculus miR-7068-5p 12 80
mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p 12 80
mmu-miR-7047-5p MIMAT0027998 Mus musculus miR-7047-5p 12 80
mmu-miR-6981-5p MIMAT0027864 Mus musculus miR-6981-5p 12 80
mmu-miR-6977-5p MIMAT0027856 Mus musculus miR-6977-5p 12 80
mmu-miR-6974-5p MIMAT0027850 Mus musculus miR-6974-5p 12 80
mmu-miR-6939-3p MIMAT0027779 Mus musculus miR-6939-3p 12 80
mmu-miR-6921-5p MIMAT0027742 Mus musculus miR-6921-5p 12 80
mmu-miR-6902-5p MIMAT0027704 Mus musculus miR-6902-5p 12 80
hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p 12 80
hsa-miR-6875-5p MIMAT0027650 Homo sapiens miR-6875-5p 12 80
hsa-miR-6862-3p MIMAT0027626 Homo sapiens miR-6862-3p 12 80
hsa-miR-6858-5p MIMAT0027616 Homo sapiens miR-6858-5p 12 80
hsa-miR-6804-5p MIMAT0027508 Homo sapiens miR-6804-5p 12 80
hsa-miR-6765-5p MIMAT0027430 Homo sapiens miR-6765-5p 12 80
hsa-miR-6511b-3p MIMAT0025848 Homo sapiens miR-6511b-3p 12 80
hsa-miR-6511a-3p MIMAT0025479 Homo sapiens miR-6511a-3p 12 80
mmu-miR-6337 MIMAT0025080 Mus musculus miR-6337 12 80
ppe-miR477b-5p MIMAT0031171 Prunus persica miR477b-5p 12 80
ppe-miR477a-5p MIMAT0031170 Prunus persica miR477a-5p 12 80
mml-miR-6133 MIMAT0024626 Macaca mulatta miR-6133 12 80
mml-miR-6130 MIMAT0024623 Macaca mulatta miR-6130 12 80
mml-miR-6129 MIMAT0024622 Macaca mulatta miR-6129 12 80
mml-miR-6127 MIMAT0024619 Macaca mulatta miR-6127 12 80
hsa-miR-6133 MIMAT0024617 Homo sapiens miR-6133 12 80
hsa-miR-6130 MIMAT0024614 Homo sapiens miR-6130 12 80
hsa-miR-6129 MIMAT0024613 Homo sapiens miR-6129 12 80
hsa-miR-6127 MIMAT0024610 Homo sapiens miR-6127 12 80
ptr-miR-6133 MIMAT0024607 Pan troglodytes miR-6133 12 80
ptr-miR-6130 MIMAT0024604 Pan troglodytes miR-6130 12 80
ptr-miR-6129 MIMAT0024603 Pan troglodytes miR-6129 12 80
ptr-miR-6127 MIMAT0024600 Pan troglodytes miR-6127 12 80
ggo-miR-3126 MIMAT0024261 Gorilla gorilla miR-3126 12 80
ggo-miR-4510 MIMAT0024109 Gorilla gorilla miR-4510 12 80
ggo-miR-423 MIMAT0024085 Gorilla gorilla miR-423 12 80
ptr-miR-4510 MIMAT0024027 Pan troglodytes miR-4510 12 80
cgr-miR-423-5p MIMAT0023956 Cricetulus griseus miR-423-5p 12 80
hco-miR-265 MIMAT0023508 Haemonchus contortus miR-265 12 80
hco-miR-5952 MIMAT0023454 Haemonchus contortus miR-5952 12 80
gma-miR5769 MIMAT0023166 Glycine max miR5769 12 80
mtr-miR5037c MIMAT0023153 Medicago truncatula miR5037c 12 80
mtr-miR5037b MIMAT0023151 Medicago truncatula miR5037b 12 80
mtr-miR5037a MIMAT0023150 Medicago truncatula miR5037a 12 80
tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p 12 80
aca-miR-460b-5p MIMAT0021972 Anolis carolinensis miR-460b-5p 12 80
gma-miR5037b MIMAT0021605 Glycine max miR5037b 12 80
hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194 12 80
bdi-miR319a MIMAT0020712 Brachypodium distachyon miR319a 12 80
osa-miR5148c MIMAT0021096 Oryza sativa miR5148c 12 80
osa-miR5148b MIMAT0021095 Oryza sativa miR5148b 12 80
osa-miR5148a MIMAT0021094 Oryza sativa miR5148a 12 80
sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii miR-4818b-5p 12 80
hsa-miR-4721 MIMAT0019835 Homo sapiens miR-4721 12 80
hsa-miR-4710 MIMAT0019815 Homo sapiens miR-4710 12 80
mmu-miR-3961 MIMAT0019338 Mus musculus miR-3961 12 80
hsa-miR-4510 MIMAT0019047 Homo sapiens miR-4510 12 80
hsa-miR-4419a MIMAT0018931 Homo sapiens miR-4419a 12 80
rno-miR-3573-5p MIMAT0017856 Rattus norvegicus miR-3573-5p 12 80
ppy-miR-1238 MIMAT0016168 Pongo pygmaeus miR-1238 12 80
ppy-miR-1224-5p MIMAT0016158 Pongo pygmaeus miR-1224-5p 12 80
ppy-miR-423-5p MIMAT0015882 Pongo pygmaeus miR-423-5p 12 80
aly-miR3441-3p.1 MIMAT0017715 Arabidopsis lyrata miR3441-3p.1 12 80
hsa-miR-3184-5p MIMAT0015064 Homo sapiens miR-3184-5p 12 80
hsa-miR-3126-5p MIMAT0014989 Homo sapiens miR-3126-5p 12 80
tgu-miR-460b-5p MIMAT0014476 Taeniopygia guttata miR-460b-5p 12 80
ssc-miR-423-5p MIMAT0013880 Sus scrofa miR-423-5p 12 80
eca-miR-423-5p MIMAT0013039 Equus caballus miR-423-5p 12 80
rno-miR-1224 MIMAT0012827 Rattus norvegicus miR-1224 12 80
hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p 12 80
bta-miR-2443 MIMAT0012018 Bos taurus miR-2443 12 80
osa-miR2096-3p MIMAT0010057 Oryza sativa miR2096-3p 12 80
bta-miR-1224 MIMAT0009944 Bos taurus miR-1224 12 80
nve-miR-2043b-3p MIMAT0009827 Nematostella vectensis miR-2043b-3p 12 80
nve-miR-2043a-3p MIMAT0009811 Nematostella vectensis miR-2043a-3p 12 80
cfa-miR-423a MIMAT0006742 Canis familiaris miR-423a 12 80
mml-miR-423-5p MIMAT0006321 Macaca mulatta miR-423-5p 12 80
gga-miR-1785 MIMAT0007697 Gallus gallus miR-1785 12 80
gga-miR-1671 MIMAT0007555 Gallus gallus miR-1671 12 80
mml-miR-1224-5p MIMAT0005570 Macaca mulatta miR-1224-5p 12 80
ptr-miR-1224-5p MIMAT0005568 Pan troglodytes miR-1224-5p 12 80
rno-miR-423-5p MIMAT0017305 Rattus norvegicus miR-423-5p 12 80
ppt-miR477g-5p MIMAT0004362 Physcomitrella patens miR477g-5p 12 80
ppt-miR477f MIMAT0004361 Physcomitrella patens miR477f 12 80
bta-miR-423-5p MIMAT0012537 Bos taurus miR-423-5p 12 80
mmu-miR-423-5p MIMAT0004825 Mus musculus miR-423-5p 12 80
mmu-miR-1224-5p MIMAT0005460 Mus musculus miR-1224-5p 12 80
hsa-miR-1224-5p MIMAT0005458 Homo sapiens miR-1224-5p 12 80
sv40-miR-S1-5p MIMAT0003344 Simian virus miR-S1-5p 12 80
hsa-miR-423-5p MIMAT0004748 Homo sapiens miR-423-5p 12 80
cel-miR-265 MIMAT0000321 Caenorhabditis elegans miR-265 12 80
>gsa-miR-9393-5p MIMAT0035330 Gyrodactylus salaris miR-9393-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>mmu-miR-7070-5p MIMAT0028046 Mus musculus miR-7070-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>mmu-miR-6927-5p MIMAT0027754 Mus musculus miR-6927-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>hsa-miR-6834-5p MIMAT0027568 Homo sapiens miR-6834-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>bta-miR-2309 MIMAT0011821 Bos taurus miR-2309
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 2 gtgaggg 8
>hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgaggg 7
|||||||
Sbjct: 1 gtgaggg 7
>ppt-miR1062 MIMAT0005181 Physcomitrella patens miR1062
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430i-5p MIMAT0032003 Danio rerio miR-430i-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-17-5p MIMAT0032002 Danio rerio miR-430a-17-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-16-5p MIMAT0032001 Danio rerio miR-430a-16-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-15-5p MIMAT0032000 Danio rerio miR-430a-15-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-14-5p MIMAT0031999 Danio rerio miR-430a-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-13-5p MIMAT0031998 Danio rerio miR-430a-13-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-12-5p MIMAT0031997 Danio rerio miR-430a-12-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-11-5p MIMAT0031996 Danio rerio miR-430a-11-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-4-5p MIMAT0031995 Danio rerio miR-430a-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>dre-miR-430a-5p MIMAT0031994 Danio rerio miR-430a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgaggg 7
|||||||
Sbjct: 8 gtgaggg 2
>chi-miR-423-5p MIMAT0036220 Capra hircus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>chi-miR-1224 MIMAT0035919 Capra hircus miR-1224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>bdi-miR9488 MIMAT0035495 Brachypodium distachyon miR9488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>efu-miR-423 MIMAT0035024 Eptesicus fuscus miR-423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>eca-miR-9077 MIMAT0034622 Equus caballus miR-9077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 3 tgaggg 8
>gra-miR8646 MIMAT0034004 Gossypium raimondii miR8646
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 3 gtgagg 8
>mdo-miR-1643a-5p MIMAT0028594 Monodelphis domestica
miR-1643a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 8 gtgagg 3
>mmu-miR-7068-5p MIMAT0028042 Mus musculus miR-7068-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>mmu-miR-7056-3p MIMAT0028017 Mus musculus miR-7056-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>mmu-miR-7047-5p MIMAT0027998 Mus musculus miR-7047-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mmu-miR-6981-5p MIMAT0027864 Mus musculus miR-6981-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>mmu-miR-6977-5p MIMAT0027856 Mus musculus miR-6977-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>mmu-miR-6974-5p MIMAT0027850 Mus musculus miR-6974-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>mmu-miR-6939-3p MIMAT0027779 Mus musculus miR-6939-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>mmu-miR-6921-5p MIMAT0027742 Mus musculus miR-6921-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mmu-miR-6902-5p MIMAT0027704 Mus musculus miR-6902-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 8 gtgagg 3
>hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 6 tgaggg 1
>hsa-miR-6875-5p MIMAT0027650 Homo sapiens miR-6875-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6862-3p MIMAT0027626 Homo sapiens miR-6862-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>hsa-miR-6858-5p MIMAT0027616 Homo sapiens miR-6858-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>hsa-miR-6804-5p MIMAT0027508 Homo sapiens miR-6804-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6765-5p MIMAT0027430 Homo sapiens miR-6765-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>hsa-miR-6511b-3p MIMAT0025848 Homo sapiens miR-6511b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>hsa-miR-6511a-3p MIMAT0025479 Homo sapiens miR-6511a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>mmu-miR-6337 MIMAT0025080 Mus musculus miR-6337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ppe-miR477b-5p MIMAT0031171 Prunus persica miR477b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 7 tgaggg 2
>ppe-miR477a-5p MIMAT0031170 Prunus persica miR477a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 7 tgaggg 2
>mml-miR-6133 MIMAT0024626 Macaca mulatta miR-6133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mml-miR-6130 MIMAT0024623 Macaca mulatta miR-6130
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mml-miR-6129 MIMAT0024622 Macaca mulatta miR-6129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mml-miR-6127 MIMAT0024619 Macaca mulatta miR-6127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6133 MIMAT0024617 Homo sapiens miR-6133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6130 MIMAT0024614 Homo sapiens miR-6130
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6129 MIMAT0024613 Homo sapiens miR-6129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-6127 MIMAT0024610 Homo sapiens miR-6127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ptr-miR-6133 MIMAT0024607 Pan troglodytes miR-6133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ptr-miR-6130 MIMAT0024604 Pan troglodytes miR-6130
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ptr-miR-6129 MIMAT0024603 Pan troglodytes miR-6129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ptr-miR-6127 MIMAT0024600 Pan troglodytes miR-6127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ggo-miR-3126 MIMAT0024261 Gorilla gorilla miR-3126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ggo-miR-4510 MIMAT0024109 Gorilla gorilla miR-4510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ggo-miR-423 MIMAT0024085 Gorilla gorilla miR-423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ptr-miR-4510 MIMAT0024027 Pan troglodytes miR-4510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>cgr-miR-423-5p MIMAT0023956 Cricetulus griseus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hco-miR-265 MIMAT0023508 Haemonchus contortus miR-265
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hco-miR-5952 MIMAT0023454 Haemonchus contortus miR-5952
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>gma-miR5769 MIMAT0023166 Glycine max miR5769
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mtr-miR5037c MIMAT0023153 Medicago truncatula miR5037c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>mtr-miR5037b MIMAT0023151 Medicago truncatula miR5037b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>mtr-miR5037a MIMAT0023150 Medicago truncatula miR5037a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>aca-miR-460b-5p MIMAT0021972 Anolis carolinensis miR-460b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 6 tgaggg 1
>gma-miR5037b MIMAT0021605 Glycine max miR5037b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>hsa-miR-5194 MIMAT0021125 Homo sapiens miR-5194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>bdi-miR319a MIMAT0020712 Brachypodium distachyon miR319a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>osa-miR5148c MIMAT0021096 Oryza sativa miR5148c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>osa-miR5148b MIMAT0021095 Oryza sativa miR5148b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>osa-miR5148a MIMAT0021094 Oryza sativa miR5148a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii
miR-4818b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgagg 6
||||||
Sbjct: 6 gtgagg 1
>hsa-miR-4721 MIMAT0019835 Homo sapiens miR-4721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-4710 MIMAT0019815 Homo sapiens miR-4710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 3 gtgagg 8
>mmu-miR-3961 MIMAT0019338 Mus musculus miR-3961
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>hsa-miR-4510 MIMAT0019047 Homo sapiens miR-4510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-4419a MIMAT0018931 Homo sapiens miR-4419a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>rno-miR-3573-5p MIMAT0017856 Rattus norvegicus miR-3573-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ppy-miR-1238 MIMAT0016168 Pongo pygmaeus miR-1238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>ppy-miR-1224-5p MIMAT0016158 Pongo pygmaeus miR-1224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>ppy-miR-423-5p MIMAT0015882 Pongo pygmaeus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>aly-miR3441-3p.1 MIMAT0017715 Arabidopsis lyrata miR3441-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 6 tgaggg 1
>hsa-miR-3184-5p MIMAT0015064 Homo sapiens miR-3184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-3126-5p MIMAT0014989 Homo sapiens miR-3126-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>tgu-miR-460b-5p MIMAT0014476 Taeniopygia guttata miR-460b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 6 tgaggg 1
>ssc-miR-423-5p MIMAT0013880 Sus scrofa miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>eca-miR-423-5p MIMAT0013039 Equus caballus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>rno-miR-1224 MIMAT0012827 Rattus norvegicus miR-1224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 3 gtgagg 8
>bta-miR-2443 MIMAT0012018 Bos taurus miR-2443
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>osa-miR2096-3p MIMAT0010057 Oryza sativa miR2096-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 3 tgaggg 8
>bta-miR-1224 MIMAT0009944 Bos taurus miR-1224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>nve-miR-2043b-3p MIMAT0009827 Nematostella vectensis
miR-2043b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>nve-miR-2043a-3p MIMAT0009811 Nematostella vectensis
miR-2043a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 8 tgaggg 3
>cfa-miR-423a MIMAT0006742 Canis familiaris miR-423a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mml-miR-423-5p MIMAT0006321 Macaca mulatta miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>gga-miR-1785 MIMAT0007697 Gallus gallus miR-1785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>gga-miR-1671 MIMAT0007555 Gallus gallus miR-1671
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>mml-miR-1224-5p MIMAT0005570 Macaca mulatta miR-1224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>ptr-miR-1224-5p MIMAT0005568 Pan troglodytes miR-1224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>rno-miR-423-5p MIMAT0017305 Rattus norvegicus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>ppt-miR477g-5p MIMAT0004362 Physcomitrella patens miR477g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 7 tgaggg 2
>ppt-miR477f MIMAT0004361 Physcomitrella patens miR477f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaggg 7
||||||
Sbjct: 7 tgaggg 2
>bta-miR-423-5p MIMAT0012537 Bos taurus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mmu-miR-423-5p MIMAT0004825 Mus musculus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>mmu-miR-1224-5p MIMAT0005460 Mus musculus miR-1224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>hsa-miR-1224-5p MIMAT0005458 Homo sapiens miR-1224-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgagg 6
||||||
Sbjct: 1 gtgagg 6
>sv40-miR-S1-5p MIMAT0003344 Simian virus miR-S1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>hsa-miR-423-5p MIMAT0004748 Homo sapiens miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
>cel-miR-265 MIMAT0000321 Caenorhabditis elegans miR-265
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaggg 7
||||||
Sbjct: 1 tgaggg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 148
Number of extensions: 130
Number of successful extensions: 115
Number of sequences better than 100.0: 115
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 115
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
