BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8932 MIMAT0034460 Equus caballus miR-8932 14 20
cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804 14 20
ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p 14 20
osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p 14 20
tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p 14 20
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p 14 20
bta-miR-2400 MIMAT0011956 Bos taurus miR-2400 14 20
mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p 14 20
oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus miR-1419b-5p 14 20
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107 14 20
oha-miR-338-3p MIMAT0036904 Ophiophagus hannah miR-338-3p 12 80
chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p 12 80
chi-miR-338-3p MIMAT0036150 Capra hircus miR-338-3p 12 80
bra-miR6032-3p MIMAT0035863 Brassica rapa miR6032-3p 12 80
efu-miR-9238 MIMAT0034854 Eptesicus fuscus miR-9238 12 80
eca-miR-3548 MIMAT0034603 Equus caballus miR-3548 12 80
eca-miR-8979 MIMAT0034516 Equus caballus miR-8979 12 80
eca-miR-8929 MIMAT0034457 Equus caballus miR-8929 12 80
eca-miR-8915 MIMAT0034443 Equus caballus miR-8915 12 80
ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173 12 80
ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168 12 80
ssa-miR-338a-3p MIMAT0032615 Salmo salar miR-338a-3p 12 80
prd-miR-7919-3p MIMAT0030679 Panagrellus redivivus miR-7919-3p 12 80
ipu-miR-16c MIMAT0029538 Ictalurus punctatus miR-16c 12 80
ipu-miR-338 MIMAT0029502 Ictalurus punctatus miR-338 12 80
gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p 12 80
mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p 12 80
mdo-miR-7349-5p MIMAT0028710 Monodelphis domestica miR-7349-5p 12 80
mml-miR-7193-5p MIMAT0028346 Macaca mulatta miR-7193-5p 12 80
mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p 12 80
ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p 12 80
ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b 12 80
ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a 12 80
ccr-miR-338 MIMAT0026291 Cyprinus carpio miR-338 12 80
mmu-miR-7087-3p MIMAT0028081 Mus musculus miR-7087-3p 12 80
mmu-miR-7025-3p MIMAT0027955 Mus musculus miR-7025-3p 12 80
mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p 12 80
hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p 12 80
gga-miR-6650-5p MIMAT0025750 Gallus gallus miR-6650-5p 12 80
gga-miR-6649-3p MIMAT0025749 Gallus gallus miR-6649-3p 12 80
gga-miR-6611-5p MIMAT0025706 Gallus gallus miR-6611-5p 12 80
gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p 12 80
gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p 12 80
pgi-miR6143b-3p MIMAT0027269 Panax ginseng miR6143b-3p 12 80
ggo-miR-1287 MIMAT0024233 Gorilla gorilla miR-1287 12 80
ggo-miR-338 MIMAT0024125 Gorilla gorilla miR-338 12 80
cgr-miR-338 MIMAT0023918 Cricetulus griseus miR-338 12 80
hco-miR-5973 MIMAT0023480 Haemonchus contortus miR-5973 12 80
sha-miR-338 MIMAT0022818 Sarcophilus harrisii miR-338 12 80
ola-miR-338-3p MIMAT0022580 Oryzias latipes miR-338-3p 12 80
hsa-miR-5580-5p MIMAT0022273 Homo sapiens miR-5580-5p 12 80
aca-miR-383-3p MIMAT0021953 Anolis carolinensis miR-383-3p 12 80
aca-miR-338-3p MIMAT0021938 Anolis carolinensis miR-338-3p 12 80
gma-miR862a MIMAT0021004 Glycine max miR862a 12 80
hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p 12 80
pma-miR-4563 MIMAT0019595 Petromyzon marinus miR-4563 12 80
pma-miR-4558 MIMAT0019590 Petromyzon marinus miR-4558 12 80
tca-miR-316-3p MIMAT0018717 Tribolium castaneum miR-316-3p 12 80
hsa-miR-3692-5p MIMAT0018121 Homo sapiens miR-3692-5p 12 80
vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p 12 80
rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575 12 80
rno-miR-3548 MIMAT0017806 Rattus norvegicus miR-3548 12 80
ppy-miR-1287 MIMAT0016210 Pongo pygmaeus miR-1287 12 80
ppy-miR-512-3p MIMAT0015937 Pongo pygmaeus miR-512-3p 12 80
ppy-miR-338-3p MIMAT0015841 Pongo pygmaeus miR-338-3p 12 80
ssc-miR-338 MIMAT0015713 Sus scrofa miR-338 12 80
tgu-miR-338-3p MIMAT0014542 Taeniopygia guttata miR-338-3p 12 80
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958 12 80
eca-miR-338-3p MIMAT0013036 Equus caballus miR-338-3p 12 80
rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p 12 80
bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723 12 80
bta-miR-2452 MIMAT0012033 Bos taurus miR-2452 12 80
bta-miR-1287 MIMAT0009971 Bos taurus miR-1287 12 80
bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p 12 80
bta-miR-338 MIMAT0009292 Bos taurus miR-338 12 80
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634 12 80
ptr-miR-512 MIMAT0008180 Pan troglodytes miR-512 12 80
ptr-miR-338 MIMAT0008106 Pan troglodytes miR-338 12 80
cfa-miR-338 MIMAT0006739 Canis familiaris miR-338 12 80
mml-miR-512-3p MIMAT0006372 Macaca mulatta miR-512-3p 12 80
mml-miR-338-3p MIMAT0006278 Macaca mulatta miR-338-3p 12 80
gga-miR-1754-5p MIMAT0007661 Gallus gallus miR-1754-5p 12 80
gga-miR-1737 MIMAT0007640 Gallus gallus miR-1737 12 80
hsa-miR-1287-5p MIMAT0005878 Homo sapiens miR-1287-5p 12 80
ppt-miR1045 MIMAT0005158 Physcomitrella patens miR1045 12 80
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1 12 80
ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p 12 80
mdo-miR-338 MIMAT0004136 Monodelphis domestica miR-338 12 80
xtr-miR-338 MIMAT0003665 Xenopus tropicalis miR-338 12 80
xtr-miR-93b MIMAT0003660 Xenopus tropicalis miR-93b 12 80
mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p 12 80
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634 12 80
tni-miR-338 MIMAT0003008 Tetraodon nigroviridis miR-338 12 80
fru-miR-338 MIMAT0003007 Fugu rubripes miR-338 12 80
hsa-miR-512-3p MIMAT0002823 Homo sapiens miR-512-3p 12 80
kshv-miR-K12-6-5p MIMAT0002188 Kaposi sarcoma-associated miR-K12... 12 80
dre-miR-338 MIMAT0001873 Danio rerio miR-338 12 80
zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p 12 80
zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p 12 80
zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p 12 80
hsa-miR-338-3p MIMAT0000763 Homo sapiens miR-338-3p 12 80
mmu-miR-338-3p MIMAT0000582 Mus musculus miR-338-3p 12 80
rno-miR-338-3p MIMAT0000581 Rattus norvegicus miR-338-3p 12 80
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p 12 80
>eca-miR-8932 MIMAT0034460 Equus caballus miR-8932
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 8 gtgctgg 2
>ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 7 gtgctgg 1
>osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 1 gtgctgg 7
>tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 8 gtgctgg 2
>hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 1 gtgctgg 7
>bta-miR-2400 MIMAT0011956 Bos taurus miR-2400
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 7 gtgctgg 1
>mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus
miR-1419b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>oha-miR-338-3p MIMAT0036904 Ophiophagus hannah miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 8 gtgctg 3
>chi-miR-338-3p MIMAT0036150 Capra hircus miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>bra-miR6032-3p MIMAT0035863 Brassica rapa miR6032-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 3 tgctgg 8
>efu-miR-9238 MIMAT0034854 Eptesicus fuscus miR-9238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>eca-miR-3548 MIMAT0034603 Equus caballus miR-3548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>eca-miR-8979 MIMAT0034516 Equus caballus miR-8979
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>eca-miR-8929 MIMAT0034457 Equus caballus miR-8929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>eca-miR-8915 MIMAT0034443 Equus caballus miR-8915
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>ath-miR8173 MIMAT0032772 Arabidopsis thaliana miR8173
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>ssa-miR-338a-3p MIMAT0032615 Salmo salar miR-338a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>prd-miR-7919-3p MIMAT0030679 Panagrellus redivivus miR-7919-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>ipu-miR-16c MIMAT0029538 Ictalurus punctatus miR-16c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 6 tgctgg 1
>ipu-miR-338 MIMAT0029502 Ictalurus punctatus miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>gga-miR-7472-5p MIMAT0029098 Gallus gallus miR-7472-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 8 gtgctg 3
>mdo-miR-7349-5p MIMAT0028710 Monodelphis domestica miR-7349-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>mml-miR-7193-5p MIMAT0028346 Macaca mulatta miR-7193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>mml-miR-7189-5p MIMAT0028336 Macaca mulatta miR-7189-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 8 gtgctg 3
>ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 8 gtgctg 3
>ccr-miR-338 MIMAT0026291 Cyprinus carpio miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>mmu-miR-7087-3p MIMAT0028081 Mus musculus miR-7087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>mmu-miR-7025-3p MIMAT0027955 Mus musculus miR-7025-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 6 tgctgg 1
>hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>gga-miR-6650-5p MIMAT0025750 Gallus gallus miR-6650-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>gga-miR-6649-3p MIMAT0025749 Gallus gallus miR-6649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6611-5p MIMAT0025706 Gallus gallus miR-6611-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>pgi-miR6143b-3p MIMAT0027269 Panax ginseng miR6143b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>ggo-miR-1287 MIMAT0024233 Gorilla gorilla miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>ggo-miR-338 MIMAT0024125 Gorilla gorilla miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>cgr-miR-338 MIMAT0023918 Cricetulus griseus miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>hco-miR-5973 MIMAT0023480 Haemonchus contortus miR-5973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 3 tgctgg 8
>sha-miR-338 MIMAT0022818 Sarcophilus harrisii miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>ola-miR-338-3p MIMAT0022580 Oryzias latipes miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>hsa-miR-5580-5p MIMAT0022273 Homo sapiens miR-5580-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>aca-miR-383-3p MIMAT0021953 Anolis carolinensis miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 8 gtgctg 3
>aca-miR-338-3p MIMAT0021938 Anolis carolinensis miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>gma-miR862a MIMAT0021004 Glycine max miR862a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>pma-miR-4563 MIMAT0019595 Petromyzon marinus miR-4563
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>pma-miR-4558 MIMAT0019590 Petromyzon marinus miR-4558
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>tca-miR-316-3p MIMAT0018717 Tribolium castaneum miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 6 tgctgg 1
>hsa-miR-3692-5p MIMAT0018121 Homo sapiens miR-3692-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 3 tgctgg 8
>vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 3 tgctgg 8
>rno-miR-3548 MIMAT0017806 Rattus norvegicus miR-3548
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>ppy-miR-1287 MIMAT0016210 Pongo pygmaeus miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>ppy-miR-512-3p MIMAT0015937 Pongo pygmaeus miR-512-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>ppy-miR-338-3p MIMAT0015841 Pongo pygmaeus miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>ssc-miR-338 MIMAT0015713 Sus scrofa miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>tgu-miR-338-3p MIMAT0014542 Taeniopygia guttata miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>eca-miR-338-3p MIMAT0013036 Equus caballus miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 6 tgctgg 1
>bta-miR-2452 MIMAT0012033 Bos taurus miR-2452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 1 gtgctg 6
>bta-miR-1287 MIMAT0009971 Bos taurus miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>bta-miR-338 MIMAT0009292 Bos taurus miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>ptr-miR-512 MIMAT0008180 Pan troglodytes miR-512
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>ptr-miR-338 MIMAT0008106 Pan troglodytes miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>cfa-miR-338 MIMAT0006739 Canis familiaris miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>mml-miR-512-3p MIMAT0006372 Macaca mulatta miR-512-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>mml-miR-338-3p MIMAT0006278 Macaca mulatta miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>gga-miR-1754-5p MIMAT0007661 Gallus gallus miR-1754-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>gga-miR-1737 MIMAT0007640 Gallus gallus miR-1737
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>hsa-miR-1287-5p MIMAT0005878 Homo sapiens miR-1287-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>ppt-miR1045 MIMAT0005158 Physcomitrella patens miR1045
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
>mdo-miR-338 MIMAT0004136 Monodelphis domestica miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>xtr-miR-338 MIMAT0003665 Xenopus tropicalis miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>xtr-miR-93b MIMAT0003660 Xenopus tropicalis miR-93b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>hsa-miR-634 MIMAT0003304 Homo sapiens miR-634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 8 tgctgg 3
>tni-miR-338 MIMAT0003008 Tetraodon nigroviridis miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>fru-miR-338 MIMAT0003007 Fugu rubripes miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>hsa-miR-512-3p MIMAT0002823 Homo sapiens miR-512-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgctg 6
||||||
Sbjct: 3 gtgctg 8
>kshv-miR-K12-6-5p MIMAT0002188 Kaposi sarcoma-associated
miR-K12-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 6 tgctgg 1
>dre-miR-338 MIMAT0001873 Danio rerio miR-338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgctg 6
||||||
Sbjct: 6 gtgctg 1
>hsa-miR-338-3p MIMAT0000763 Homo sapiens miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>mmu-miR-338-3p MIMAT0000582 Mus musculus miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>rno-miR-338-3p MIMAT0000581 Rattus norvegicus miR-338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgctgg 7
||||||
Sbjct: 7 tgctgg 2
>cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgctgg 7
||||||
Sbjct: 1 tgctgg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 148
Number of extensions: 138
Number of successful extensions: 104
Number of sequences better than 100.0: 104
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 104
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
