BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p 16 6.9
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p 16 6.9
eca-miR-8932 MIMAT0034460 Equus caballus miR-8932 14 27
cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804 14 27
ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p 14 27
osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p 14 27
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958 14 27
bta-miR-2400 MIMAT0011956 Bos taurus miR-2400 14 27
mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p 14 27
osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p 14 27
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634 14 27
gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654 14 27
oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus miR-1419b-5p 14 27
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107 14 27
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1 14 27
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634 14 27
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p 14 27
>tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gtgctggt 8
||||||||
Sbjct: 8 gtgctggt 1
>hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtgctggt 8
||||||||
Sbjct: 1 gtgctggt 8
>eca-miR-8932 MIMAT0034460 Equus caballus miR-8932
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 8 gtgctgg 2
>ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 7 gtgctgg 1
>osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 1 gtgctgg 7
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgctggt 8
|||||||
Sbjct: 1 tgctggt 7
>bta-miR-2400 MIMAT0011956 Bos taurus miR-2400
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgctgg 7
|||||||
Sbjct: 7 gtgctgg 1
>mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgctggt 8
|||||||
Sbjct: 7 tgctggt 1
>ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgctggt 8
|||||||
Sbjct: 8 tgctggt 2
>gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgctggt 8
|||||||
Sbjct: 2 tgctggt 8
>oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus
miR-1419b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgctgg 7
|||||||
Sbjct: 2 gtgctgg 8
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgctggt 8
|||||||
Sbjct: 1 tgctggt 7
>hsa-miR-634 MIMAT0003304 Homo sapiens miR-634
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgctggt 8
|||||||
Sbjct: 8 tgctggt 2
>cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgctggt 8
|||||||
Sbjct: 1 tgctggt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 285
Number of extensions: 266
Number of successful extensions: 147
Number of sequences better than 100.0: 17
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)