BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b20-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p           16   6.9  
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p                        16   6.9  
eca-miR-8932 MIMAT0034460 Equus caballus miR-8932                      14      27
cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804                    14      27
ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p                   14      27
osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p                  14      27
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958                 14      27
bta-miR-2400 MIMAT0011956 Bos taurus miR-2400                          14      27
mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p                       14      27
osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p                    14      27
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634                       14      27
gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654                       14      27
oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus miR-1419b-5p    14      27
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107            14      27
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1           14      27
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634                          14      27
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p            14      27
>tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtgctggt 8
         ||||||||
Sbjct: 8 gtgctggt 1
>hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gtgctggt 8
         ||||||||
Sbjct: 1 gtgctggt 8
>eca-miR-8932 MIMAT0034460 Equus caballus miR-8932
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 2 gtgctgg 8
>cfa-miR-8804 MIMAT0034294 Canis familiaris miR-8804
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 8 gtgctgg 2
>ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 7 gtgctgg 1
>osa-miR1437b-3p MIMAT0029954 Oryza sativa miR1437b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 1 gtgctgg 7
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 1 tgctggt 7
>bta-miR-2400 MIMAT0011956 Bos taurus miR-2400
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 7 gtgctgg 1
>mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 2 gtgctgg 8
>osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 7 tgctggt 1
>ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 8 tgctggt 2
>gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 2 tgctggt 8
>oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus
         miR-1419b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 2 gtgctgg 8
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgctgg 7
         |||||||
Sbjct: 2 gtgctgg 8
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 1 tgctggt 7
>hsa-miR-634 MIMAT0003304 Homo sapiens miR-634
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 8 tgctggt 2
>cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgctggt 8
         |||||||
Sbjct: 1 tgctggt 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 285
Number of extensions: 266
Number of successful extensions: 147
Number of sequences better than 100.0: 17
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)