BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B8-5p MIMAT0031767 Herpes B miR-B8-5p 14 20
hsa-miR-7847-3p MIMAT0030422 Homo sapiens miR-7847-3p 14 20
oan-miR-7400-5p MIMAT0028942 Ornithorhynchus anatinus miR-7400-5p 14 20
mmu-miR-7056-5p MIMAT0028016 Mus musculus miR-7056-5p 14 20
tgu-miR-2982 MIMAT0014492 Taeniopygia guttata miR-2982 14 20
bta-miR-2893 MIMAT0013851 Bos taurus miR-2893 14 20
gga-miR-1706 MIMAT0007598 Gallus gallus miR-1706 14 20
chi-miR-2411-5p MIMAT0036093 Capra hircus miR-2411-5p 12 80
gsa-miR-281-5p MIMAT0035268 Gyrodactylus salaris miR-281-5p 12 80
dme-miR-9380-3p MIMAT0035224 Drosophila melanogaster miR-9380-3p 12 80
efu-miR-9259 MIMAT0034879 Eptesicus fuscus miR-9259 12 80
eca-miR-9135 MIMAT0034686 Equus caballus miR-9135 12 80
eca-miR-9131 MIMAT0034682 Equus caballus miR-9131 12 80
atr-miR396d MIMAT0033941 Amborella trichopoda miR396d 12 80
sma-miR-8468-3p MIMAT0033656 Schistosoma mansoni miR-8468-3p 12 80
str-miR-8391-5p MIMAT0033450 Strongyloides ratti miR-8391-5p 12 80
ppc-miR-8282c-3p MIMAT0033259 Pristionchus pacificus miR-8282c-3p 12 80
ppc-miR-8341-3p MIMAT0033228 Pristionchus pacificus miR-8341-3p 12 80
ppc-miR-8261-5p MIMAT0032995 Pristionchus pacificus miR-8261-5p 12 80
ath-miR8165 MIMAT0032761 Arabidopsis thaliana miR8165 12 80
cpa-miR477 MIMAT0031828 Carica papaya miR477 12 80
bdi-miR7732-5p MIMAT0030198 Brachypodium distachyon miR7732-5p 12 80
mtr-miR7700-5p MIMAT0030000 Medicago truncatula miR7700-5p 12 80
cbn-miR-7626 MIMAT0029668 Caenorhabditis brenneri miR-7626 12 80
mmu-miR-7062-5p MIMAT0028028 Mus musculus miR-7062-5p 12 80
mmu-miR-7033-3p MIMAT0027971 Mus musculus miR-7033-3p 12 80
mmu-miR-6972-5p MIMAT0027846 Mus musculus miR-6972-5p 12 80
hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p 12 80
hsa-miR-6792-3p MIMAT0027485 Homo sapiens miR-6792-3p 12 80
gga-miR-4732-5p MIMAT0025717 Gallus gallus miR-4732-5p 12 80
ptc-miR6426b MIMAT0025259 Populus trichocarpa miR6426b 12 80
ptc-miR6426a MIMAT0025221 Populus trichocarpa miR6426a 12 80
hme-miR-1175 MIMAT0024935 Heliconius melpomene miR-1175 12 80
rno-miR-1843a-5p MIMAT0024847 Rattus norvegicus miR-1843a-5p 12 80
gma-miR5767 MIMAT0023164 Glycine max miR5767 12 80
mtr-miR5562-3p MIMAT0022230 Medicago truncatula miR5562-3p 12 80
aca-miR-5435c-3p MIMAT0022092 Anolis carolinensis miR-5435c-3p 12 80
aca-miR-5435a MIMAT0022056 Anolis carolinensis miR-5435a 12 80
asu-miR-1175-5p MIMAT0021533 Ascaris suum miR-1175-5p 12 80
hsa-miR-4802-5p MIMAT0019981 Homo sapiens miR-4802-5p 12 80
hsa-miR-4691-5p MIMAT0019781 Homo sapiens miR-4691-5p 12 80
pma-miR-194-3p MIMAT0019501 Petromyzon marinus miR-194-3p 12 80
tca-miR-1175-5p MIMAT0018818 Tribolium castaneum miR-1175-5p 12 80
cin-miR-4088-3p MIMAT0016665 Ciona intestinalis miR-4088-3p 12 80
ppy-miR-765 MIMAT0016105 Pongo pygmaeus miR-765 12 80
bmo-miR-3273 MIMAT0015458 Bombyx mori miR-3273 12 80
hsa-miR-3198 MIMAT0015083 Homo sapiens miR-3198 12 80
cqu-miR-1175-5p MIMAT0014390 Culex quinquefasciatus miR-1175-5p 12 80
aae-miR-1175-5p MIMAT0014264 Aedes aegypti miR-1175-5p 12 80
csi-miR162-5p MIMAT0017388 Citrus sinensis miR162-5p 12 80
bta-miR-2898 MIMAT0013856 Bos taurus miR-2898 12 80
bmo-miR-1175-5p MIMAT0013612 Bombyx mori miR-1175-5p 12 80
cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p 12 80
sbi-miR396d MIMAT0011357 Sorghum bicolor miR396d 12 80
sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p 12 80
pta-miR1315 MIMAT0009132 Pinus taeda miR1315 12 80
ptr-miR-765 MIMAT0008320 Pan troglodytes miR-765 12 80
cfa-miR-1843 MIMAT0006706 Canis familiaris miR-1843 12 80
mml-miR-765 MIMAT0006509 Macaca mulatta miR-765 12 80
mml-miR-518c-5p MIMAT0026894 Macaca mulatta miR-518c-5p 12 80
gga-miR-1686 MIMAT0007575 Gallus gallus miR-1686 12 80
cin-miR-78 MIMAT0006095 Ciona intestinalis miR-78 12 80
oan-miR-1421w-5p MIMAT0007238 Ornithorhynchus anatinus miR-1421w-5p 12 80
oan-miR-1359 MIMAT0006993 Ornithorhynchus anatinus miR-1359 12 80
oan-miR-1325 MIMAT0006794 Ornithorhynchus anatinus miR-1325 12 80
smo-miR1093 MIMAT0005246 Selaginella moellendorffii miR1093 12 80
ppt-miR902i-3p MIMAT0005082 Physcomitrella patens miR902i-3p 12 80
hsa-miR-765 MIMAT0003945 Homo sapiens miR-765 12 80
mmu-miR-3475-3p MIMAT0015219 Mus musculus miR-3475-3p 12 80
mmu-miR-1843a-5p MIMAT0014805 Mus musculus miR-1843a-5p 12 80
hsa-miR-519d-5p MIMAT0026610 Homo sapiens miR-519d-5p 12 80
osa-miR166g-5p MIMAT0022881 Oryza sativa miR166g-5p 12 80
ath-miR162b-5p MIMAT0031877 Arabidopsis thaliana miR162b-5p 12 80
ath-miR162a-5p MIMAT0031876 Arabidopsis thaliana miR162a-5p 12 80
cel-miR-78 MIMAT0000050 Caenorhabditis elegans miR-78 12 80
>hbv-miR-B8-5p MIMAT0031767 Herpes B miR-B8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 2 gtggagg 8
>hsa-miR-7847-3p MIMAT0030422 Homo sapiens miR-7847-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 2 gtggagg 8
>oan-miR-7400-5p MIMAT0028942 Ornithorhynchus anatinus
miR-7400-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtggagg 7
|||||||
Sbjct: 8 gtggagg 2
>mmu-miR-7056-5p MIMAT0028016 Mus musculus miR-7056-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 2 gtggagg 8
>tgu-miR-2982 MIMAT0014492 Taeniopygia guttata miR-2982
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 2 gtggagg 8
>bta-miR-2893 MIMAT0013851 Bos taurus miR-2893
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 1 gtggagg 7
>gga-miR-1706 MIMAT0007598 Gallus gallus miR-1706
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggagg 7
|||||||
Sbjct: 2 gtggagg 8
>chi-miR-2411-5p MIMAT0036093 Capra hircus miR-2411-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>gsa-miR-281-5p MIMAT0035268 Gyrodactylus salaris miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>dme-miR-9380-3p MIMAT0035224 Drosophila melanogaster
miR-9380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 6 tggagg 1
>efu-miR-9259 MIMAT0034879 Eptesicus fuscus miR-9259
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 7 tggagg 2
>eca-miR-9135 MIMAT0034686 Equus caballus miR-9135
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 8 gtggag 3
>eca-miR-9131 MIMAT0034682 Equus caballus miR-9131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>atr-miR396d MIMAT0033941 Amborella trichopoda miR396d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 6 gtggag 1
>sma-miR-8468-3p MIMAT0033656 Schistosoma mansoni miR-8468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>str-miR-8391-5p MIMAT0033450 Strongyloides ratti miR-8391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>ppc-miR-8282c-3p MIMAT0033259 Pristionchus pacificus
miR-8282c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>ppc-miR-8341-3p MIMAT0033228 Pristionchus pacificus miR-8341-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>ppc-miR-8261-5p MIMAT0032995 Pristionchus pacificus miR-8261-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 8 gtggag 3
>ath-miR8165 MIMAT0032761 Arabidopsis thaliana miR8165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>cpa-miR477 MIMAT0031828 Carica papaya miR477
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>bdi-miR7732-5p MIMAT0030198 Brachypodium distachyon miR7732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>mtr-miR7700-5p MIMAT0030000 Medicago truncatula miR7700-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>cbn-miR-7626 MIMAT0029668 Caenorhabditis brenneri miR-7626
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>mmu-miR-7062-5p MIMAT0028028 Mus musculus miR-7062-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>mmu-miR-7033-3p MIMAT0027971 Mus musculus miR-7033-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>mmu-miR-6972-5p MIMAT0027846 Mus musculus miR-6972-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>hsa-miR-6792-3p MIMAT0027485 Homo sapiens miR-6792-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>gga-miR-4732-5p MIMAT0025717 Gallus gallus miR-4732-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>ptc-miR6426b MIMAT0025259 Populus trichocarpa miR6426b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>ptc-miR6426a MIMAT0025221 Populus trichocarpa miR6426a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>hme-miR-1175 MIMAT0024935 Heliconius melpomene miR-1175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>rno-miR-1843a-5p MIMAT0024847 Rattus norvegicus miR-1843a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>gma-miR5767 MIMAT0023164 Glycine max miR5767
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>mtr-miR5562-3p MIMAT0022230 Medicago truncatula miR5562-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>aca-miR-5435c-3p MIMAT0022092 Anolis carolinensis miR-5435c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>aca-miR-5435a MIMAT0022056 Anolis carolinensis miR-5435a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>asu-miR-1175-5p MIMAT0021533 Ascaris suum miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>hsa-miR-4802-5p MIMAT0019981 Homo sapiens miR-4802-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>hsa-miR-4691-5p MIMAT0019781 Homo sapiens miR-4691-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>pma-miR-194-3p MIMAT0019501 Petromyzon marinus miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>tca-miR-1175-5p MIMAT0018818 Tribolium castaneum miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>cin-miR-4088-3p MIMAT0016665 Ciona intestinalis miR-4088-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 8 gtggag 3
>ppy-miR-765 MIMAT0016105 Pongo pygmaeus miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>bmo-miR-3273 MIMAT0015458 Bombyx mori miR-3273
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 8 tggagg 3
>hsa-miR-3198 MIMAT0015083 Homo sapiens miR-3198
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 1 gtggag 6
>cqu-miR-1175-5p MIMAT0014390 Culex quinquefasciatus miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>aae-miR-1175-5p MIMAT0014264 Aedes aegypti miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>csi-miR162-5p MIMAT0017388 Citrus sinensis miR162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>bta-miR-2898 MIMAT0013856 Bos taurus miR-2898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>bmo-miR-1175-5p MIMAT0013612 Bombyx mori miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 6 tggagg 1
>sbi-miR396d MIMAT0011357 Sorghum bicolor miR396d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 6 gtggag 1
>sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggag 6
||||||
Sbjct: 3 gtggag 8
>pta-miR1315 MIMAT0009132 Pinus taeda miR1315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>ptr-miR-765 MIMAT0008320 Pan troglodytes miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>cfa-miR-1843 MIMAT0006706 Canis familiaris miR-1843
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>mml-miR-765 MIMAT0006509 Macaca mulatta miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>mml-miR-518c-5p MIMAT0026894 Macaca mulatta miR-518c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>gga-miR-1686 MIMAT0007575 Gallus gallus miR-1686
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>cin-miR-78 MIMAT0006095 Ciona intestinalis miR-78
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>oan-miR-1421w-5p MIMAT0007238 Ornithorhynchus anatinus
miR-1421w-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>oan-miR-1359 MIMAT0006993 Ornithorhynchus anatinus miR-1359
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggag 6
||||||
Sbjct: 6 gtggag 1
>oan-miR-1325 MIMAT0006794 Ornithorhynchus anatinus miR-1325
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>smo-miR1093 MIMAT0005246 Selaginella moellendorffii miR1093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>ppt-miR902i-3p MIMAT0005082 Physcomitrella patens miR902i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>hsa-miR-765 MIMAT0003945 Homo sapiens miR-765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>mmu-miR-3475-3p MIMAT0015219 Mus musculus miR-3475-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>mmu-miR-1843a-5p MIMAT0014805 Mus musculus miR-1843a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>hsa-miR-519d-5p MIMAT0026610 Homo sapiens miR-519d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggagg 7
||||||
Sbjct: 6 tggagg 1
>osa-miR166g-5p MIMAT0022881 Oryza sativa miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 3 tggagg 8
>ath-miR162b-5p MIMAT0031877 Arabidopsis thaliana miR162b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>ath-miR162a-5p MIMAT0031876 Arabidopsis thaliana miR162a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
>cel-miR-78 MIMAT0000050 Caenorhabditis elegans miR-78
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggagg 7
||||||
Sbjct: 1 tggagg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 105
Number of extensions: 98
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)