BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnpv-miR-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322 14 20
ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p 14 20
prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p 14 20
prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p 14 20
mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p 14 20
asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p 14 20
hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p 14 20
cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii miR1169-3p 14 20
cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p 14 20
cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p 14 20
ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p 12 80
ata-miR5062a-3p MIMAT0037187 Aegilops tauschii miR5062a-3p 12 80
ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p 12 80
ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p 12 80
gma-miR9760 MIMAT0036395 Glycine max miR9760 12 80
chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p 12 80
chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p 12 80
tae-miR9676-5p MIMAT0035802 Triticum aestivum miR9676-5p 12 80
efu-miR-9216 MIMAT0034808 Eptesicus fuscus miR-9216 12 80
eca-miR-8911 MIMAT0034439 Equus caballus miR-8911 12 80
cfa-miR-8834b MIMAT0034431 Canis familiaris miR-8834b 12 80
cfa-miR-8902 MIMAT0034412 Canis familiaris miR-8902 12 80
ssa-miR-462b-3p MIMAT0032656 Salmo salar miR-462b-3p 12 80
ssa-miR-462a-3p MIMAT0032654 Salmo salar miR-462a-3p 12 80
ppe-miR393a MIMAT0031474 Prunus persica miR393a 12 80
prd-miR-7962-5p MIMAT0030824 Panagrellus redivivus miR-7962-5p 12 80
bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon miR159b-3p.2 12 80
mdo-miR-7379-3p MIMAT0028815 Monodelphis domestica miR-7379-3p 12 80
mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p 12 80
mdo-miR-7267-3p MIMAT0028505 Monodelphis domestica miR-7267-3p 12 80
hcmv-miR-US29-5p MIMAT0028167 Human cytomegalovirus miR-US29-5p 12 80
sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p 12 80
bma-miR-5846 MIMAT0026344 Brugia malayi miR-5846 12 80
mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p 12 80
mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p 12 80
hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p 12 80
hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p 12 80
bta-miR-3956 MIMAT0025544 Bos taurus miR-3956 12 80
ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463 12 80
hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171 12 80
cca-miR6110-3p MIMAT0024548 Cynara cardunculus miR6110-3p 12 80
ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165 12 80
hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979 12 80
osa-miR5788 MIMAT0023253 Oryza sativa miR5788 12 80
aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466 12 80
aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458 12 80
aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447 12 80
aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p 12 80
gma-miR862b MIMAT0021604 Glycine max miR862b 12 80
asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p 12 80
hsa-miR-4764-5p MIMAT0019914 Homo sapiens miR-4764-5p 12 80
hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752 12 80
oar-miR-376c-5p MIMAT0019279 Ovis aries miR-376c-5p 12 80
ame-miR-3752 MIMAT0018522 Apis mellifera miR-3752 12 80
hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p 12 80
bta-miR-3578 MIMAT0016934 Bos taurus miR-3578 12 80
ssc-miR-376c MIMAT0017960 Sus scrofa miR-376c 12 80
cin-miR-4087-3p MIMAT0016663 Ciona intestinalis miR-4087-3p 12 80
rno-miR-3595 MIMAT0017903 Rattus norvegicus miR-3595 12 80
sja-miR-2d-5p MIMAT0016278 Schistosoma japonicum miR-2d-5p 12 80
sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p 12 80
ppy-miR-1261 MIMAT0016185 Pongo pygmaeus miR-1261 12 80
nvi-miR-3478 MIMAT0015707 Nasonia vitripennis miR-3478 12 80
ath-miR774b-3p MIMAT0017740 Arabidopsis thaliana miR774b-3p 12 80
aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p 12 80
hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165 12 80
mmu-miR-3109-5p MIMAT0014949 Mus musculus miR-3109-5p 12 80
tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p 12 80
ath-miR2934-3p MIMAT0020364 Arabidopsis thaliana miR2934-3p 12 80
zma-miR169m-3p MIMAT0015324 Zea mays miR169m-3p 12 80
ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p 12 80
eca-miR-1261 MIMAT0012924 Equus caballus miR-1261 12 80
mtr-miR2589 MIMAT0013260 Medicago truncatula miR2589 12 80
dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura miR-2548-5p 12 80
crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228 12 80
bta-miR-376c MIMAT0009947 Bos taurus miR-376c 12 80
cfa-miR-376c MIMAT0009888 Canis familiaris miR-376c 12 80
osa-miR1874-3p MIMAT0007828 Oryza sativa miR1874-3p 12 80
mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p 12 80
mml-miR-376c-5p MIMAT0026863 Macaca mulatta miR-376c-5p 12 80
gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p 12 80
ppt-miR1078 MIMAT0005210 Physcomitrella patens miR1078 12 80
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p 12 80
ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p 12 80
rno-miR-376b-5p MIMAT0003195 Rattus norvegicus miR-376b-5p 12 80
rno-miR-376c-5p MIMAT0017219 Rattus norvegicus miR-376c-5p 12 80
mmu-miR-376c-5p MIMAT0005295 Mus musculus miR-376c-5p 12 80
hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus miR-US25-2-3p 12 80
mmu-miR-376b-5p MIMAT0003388 Mus musculus miR-376b-5p 12 80
osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p 12 80
cel-miR-238-5p MIMAT0015114 Caenorhabditis elegans miR-238-5p 12 80
>efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 1 gtggatg 7
>prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii
miR1169-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtggatg 7
|||||||
Sbjct: 8 gtggatg 2
>cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>ata-miR319-3p MIMAT0037245 Aegilops tauschii miR319-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>ata-miR5062a-3p MIMAT0037187 Aegilops tauschii miR5062a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>ssc-miR-9825-5p MIMAT0037043 Sus scrofa miR-9825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>ssc-miR-9798-3p MIMAT0037016 Sus scrofa miR-9798-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>gma-miR9760 MIMAT0036395 Glycine max miR9760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>chi-miR-502b-3p MIMAT0036267 Capra hircus miR-502b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 6 gtggat 1
>chi-miR-432-3p MIMAT0036228 Capra hircus miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>tae-miR9676-5p MIMAT0035802 Triticum aestivum miR9676-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>efu-miR-9216 MIMAT0034808 Eptesicus fuscus miR-9216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>eca-miR-8911 MIMAT0034439 Equus caballus miR-8911
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>cfa-miR-8834b MIMAT0034431 Canis familiaris miR-8834b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>cfa-miR-8902 MIMAT0034412 Canis familiaris miR-8902
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>ssa-miR-462b-3p MIMAT0032656 Salmo salar miR-462b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>ssa-miR-462a-3p MIMAT0032654 Salmo salar miR-462a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>ppe-miR393a MIMAT0031474 Prunus persica miR393a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>prd-miR-7962-5p MIMAT0030824 Panagrellus redivivus miR-7962-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 8 gtggat 3
>bdi-miR159b-3p.2 MIMAT0030085 Brachypodium distachyon
miR159b-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 6 gtggat 1
>mdo-miR-7379-3p MIMAT0028815 Monodelphis domestica miR-7379-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 7 tggatg 2
>mdo-miR-7267-3p MIMAT0028505 Monodelphis domestica miR-7267-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>hcmv-miR-US29-5p MIMAT0028167 Human cytomegalovirus miR-US29-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>bma-miR-5846 MIMAT0026344 Brugia malayi miR-5846
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 8 tggatg 3
>mmu-miR-6947-5p MIMAT0027794 Mus musculus miR-6947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>hsa-miR-6744-5p MIMAT0027389 Homo sapiens miR-6744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>bta-miR-3956 MIMAT0025544 Bos taurus miR-3956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>hbr-miR6171 MIMAT0024790 Hevea brasiliensis miR6171
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>cca-miR6110-3p MIMAT0024548 Cynara cardunculus miR6110-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 6 gtggat 1
>ptr-miR-3165 MIMAT0024070 Pan troglodytes miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>osa-miR5788 MIMAT0023253 Oryza sativa miR5788
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>aca-miR-5458 MIMAT0022085 Anolis carolinensis miR-5458
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 8 gtggat 3
>aca-miR-5447 MIMAT0022069 Anolis carolinensis miR-5447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>aca-miR-363-5p MIMAT0021945 Anolis carolinensis miR-363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>gma-miR862b MIMAT0021604 Glycine max miR862b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>asu-miR-44b-5p MIMAT0021564 Ascaris suum miR-44b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>hsa-miR-4764-5p MIMAT0019914 Homo sapiens miR-4764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>hsa-miR-4752 MIMAT0019889 Homo sapiens miR-4752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>oar-miR-376c-5p MIMAT0019279 Ovis aries miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>ame-miR-3752 MIMAT0018522 Apis mellifera miR-3752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>hsa-miR-3681-5p MIMAT0018108 Homo sapiens miR-3681-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>bta-miR-3578 MIMAT0016934 Bos taurus miR-3578
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 8 gtggat 3
>ssc-miR-376c MIMAT0017960 Sus scrofa miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>cin-miR-4087-3p MIMAT0016663 Ciona intestinalis miR-4087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>rno-miR-3595 MIMAT0017903 Rattus norvegicus miR-3595
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>sja-miR-2d-5p MIMAT0016278 Schistosoma japonicum miR-2d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 8 tggatg 3
>sja-miR-3479-5p MIMAT0016274 Schistosoma japonicum miR-3479-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>ppy-miR-1261 MIMAT0016185 Pongo pygmaeus miR-1261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>nvi-miR-3478 MIMAT0015707 Nasonia vitripennis miR-3478
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>ath-miR774b-3p MIMAT0017740 Arabidopsis thaliana miR774b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>aly-miR3437-3p MIMAT0017706 Arabidopsis lyrata miR3437-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>hsa-miR-3165 MIMAT0015039 Homo sapiens miR-3165
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>mmu-miR-3109-5p MIMAT0014949 Mus musculus miR-3109-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>tgu-miR-363-5p MIMAT0026972 Taeniopygia guttata miR-363-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>ath-miR2934-3p MIMAT0020364 Arabidopsis thaliana miR2934-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>zma-miR169m-3p MIMAT0015324 Zea mays miR169m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 8 tggatg 3
>ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>eca-miR-1261 MIMAT0012924 Equus caballus miR-1261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>mtr-miR2589 MIMAT0013260 Medicago truncatula miR2589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 8 tggatg 3
>dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura
miR-2548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 3 gtggat 8
>crm-miR-2228 MIMAT0011625 Caenorhabditis remanei miR-2228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 7 tggatg 2
>bta-miR-376c MIMAT0009947 Bos taurus miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>cfa-miR-376c MIMAT0009888 Canis familiaris miR-376c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>osa-miR1874-3p MIMAT0007828 Oryza sativa miR1874-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>mml-miR-376c-5p MIMAT0026863 Macaca mulatta miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 7 tggatg 2
>ppt-miR1078 MIMAT0005210 Physcomitrella patens miR1078
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatg 7
||||||
Sbjct: 6 tggatg 1
>ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
>rno-miR-376b-5p MIMAT0003195 Rattus norvegicus miR-376b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>rno-miR-376c-5p MIMAT0017219 Rattus norvegicus miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>mmu-miR-376c-5p MIMAT0005295 Mus musculus miR-376c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>hcmv-miR-US25-2-3p MIMAT0001583 Human cytomegalovirus
miR-US25-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggat 6
||||||
Sbjct: 6 gtggat 1
>mmu-miR-376b-5p MIMAT0003388 Mus musculus miR-376b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggat 6
||||||
Sbjct: 1 gtggat 6
>osa-miR319a-3p MIMAT0020915 Oryza sativa miR319a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 3 tggatg 8
>cel-miR-238-5p MIMAT0015114 Caenorhabditis elegans miR-238-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatg 7
||||||
Sbjct: 1 tggatg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 132
Number of extensions: 122
Number of successful extensions: 91
Number of sequences better than 100.0: 91
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 91
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
