BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465 14 27
efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322 14 27
pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504 14 27
ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p 14 27
ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus miR-2235b-5p 14 27
prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p 14 27
prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p 14 27
mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p 14 27
mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p 14 27
mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p 14 27
asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p 14 27
hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p 14 27
ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p 14 27
bta-miR-2392 MIMAT0011945 Bos taurus miR-2392 14 27
mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p 14 27
gga-miR-1733 MIMAT0007635 Gallus gallus miR-1733 14 27
cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii miR1169-3p 14 27
ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p 14 27
hsa-miR-432-3p MIMAT0002815 Homo sapiens miR-432-3p 14 27
cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p 14 27
cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p 14 27
>nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 2 tggatgg 8
>efu-miR-9322 MIMAT0035049 Eptesicus fuscus miR-9322
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tggatgg 8
|||||||
Sbjct: 7 tggatgg 1
>ppc-miR-36-5p MIMAT0032882 Pristionchus pacificus miR-36-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus
miR-2235b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tggatgg 8
|||||||
Sbjct: 7 tggatgg 1
>prd-miR-39-5p MIMAT0030812 Panagrellus redivivus miR-39-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 1 gtggatg 7
>prd-miR-40-5p MIMAT0030680 Panagrellus redivivus miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>mdo-miR-7336-5p MIMAT0028680 Monodelphis domestica miR-7336-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>mmu-miR-7007-3p MIMAT0027919 Mus musculus miR-7007-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tggatgg 8
|||||||
Sbjct: 8 tggatgg 2
>mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 2 tggatgg 8
>asu-miR-36a-5p MIMAT0021439 Ascaris suum miR-36a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>hsa-miR-3691-5p MIMAT0018120 Homo sapiens miR-3691-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 1 tggatgg 7
>bta-miR-2392 MIMAT0011945 Bos taurus miR-2392
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 2 tggatgg 8
>mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 1 tggatgg 7
>gga-miR-1733 MIMAT0007635 Gallus gallus miR-1733
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 2 tggatgg 8
>cre-miR1169-3p MIMAT0005427 Chlamydomonas reinhardtii
miR1169-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
>ppt-miR1221-5p MIMAT0003916 Physcomitrella patens miR1221-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 1 tggatgg 7
>hsa-miR-432-3p MIMAT0002815 Homo sapiens miR-432-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tggatgg 8
|||||||
Sbjct: 2 tggatgg 8
>cel-miR-48-3p MIMAT0015098 Caenorhabditis elegans miR-48-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtggatg 7
|||||||
Sbjct: 8 gtggatg 2
>cel-miR-40-5p MIMAT0020307 Caenorhabditis elegans miR-40-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggatg 7
|||||||
Sbjct: 2 gtggatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 172
Number of extensions: 151
Number of successful extensions: 115
Number of sequences better than 100.0: 21
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)