BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-22-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p 14 20
mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p 14 20
prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8 14 20
hsa-miR-4472 MIMAT0018999 Homo sapiens miR-4472 14 20
hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447 14 20
ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909 14 20
ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275 14 20
rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus miR-rL1... 14 20
ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275 14 20
hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 14 20
chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p 12 80
efu-miR-9313 MIMAT0034988 Eptesicus fuscus miR-9313 12 80
efu-miR-4667 MIMAT0034985 Eptesicus fuscus miR-4667 12 80
eca-miR-8952 MIMAT0034481 Equus caballus miR-8952 12 80
gra-miR7486d MIMAT0034035 Gossypium raimondii miR7486d 12 80
pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498 12 80
ath-miR8181 MIMAT0032780 Arabidopsis thaliana miR8181 12 80
bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p 12 80
ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p 12 80
oan-miR-7417-5p MIMAT0028982 Ornithorhynchus anatinus miR-7417-5p 12 80
mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica miR-92a-2-5p 12 80
mmu-miR-7212-5p MIMAT0028392 Mus musculus miR-7212-5p 12 80
mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p 12 80
mmu-miR-7117-5p MIMAT0028131 Mus musculus miR-7117-5p 12 80
hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p 12 80
hsa-miR-7110-5p MIMAT0028117 Homo sapiens miR-7110-5p 12 80
mmu-miR-7085-5p MIMAT0028076 Mus musculus miR-7085-5p 12 80
mmu-miR-7073-5p MIMAT0028052 Mus musculus miR-7073-5p 12 80
mmu-miR-7006-5p MIMAT0027916 Mus musculus miR-7006-5p 12 80
mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p 12 80
mmu-miR-6910-5p MIMAT0027720 Mus musculus miR-6910-5p 12 80
mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p 12 80
hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p 12 80
hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p 12 80
hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p 12 80
hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p 12 80
hsa-miR-6842-5p MIMAT0027586 Homo sapiens miR-6842-5p 12 80
hsa-miR-6796-5p MIMAT0027492 Homo sapiens miR-6796-5p 12 80
hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p 12 80
gga-miR-6625-5p MIMAT0025721 Gallus gallus miR-6625-5p 12 80
gga-miR-6594-5p MIMAT0025688 Gallus gallus miR-6594-5p 12 80
ppe-miR477b-3p MIMAT0027288 Prunus persica miR477b-3p 12 80
ppe-miR477a-3p MIMAT0027287 Prunus persica miR477a-3p 12 80
mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p 12 80
gma-miR482e MIMAT0023227 Glycine max miR482e 12 80
hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698 12 80
aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453 12 80
gma-miR482d-5p MIMAT0021671 Glycine max miR482d-5p 12 80
mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p 12 80
mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p 12 80
hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p 12 80
hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p 12 80
pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589 12 80
mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971 12 80
gma-miR482b-5p MIMAT0018286 Glycine max miR482b-5p 12 80
tca-miR-3900-5p MIMAT0018904 Tribolium castaneum miR-3900-5p 12 80
tca-miR-3815-5p MIMAT0018654 Tribolium castaneum miR-3815-5p 12 80
ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p 12 80
ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p 12 80
ppy-miR-637 MIMAT0016075 Pongo pygmaeus miR-637 12 80
ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p 12 80
tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p 12 80
ssc-miR-361-3p MIMAT0013934 Sus scrofa miR-361-3p 12 80
eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p 12 80
bta-miR-1777a MIMAT0012032 Bos taurus miR-1777a 12 80
bta-miR-2433 MIMAT0012005 Bos taurus miR-2433 12 80
bta-miR-2431-3p MIMAT0012002 Bos taurus miR-2431-3p 12 80
bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p 12 80
ptr-miR-637 MIMAT0008293 Pan troglodytes miR-637 12 80
ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361 12 80
mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p 12 80
mml-miR-194-3p MIMAT0026837 Macaca mulatta miR-194-3p 12 80
mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p 12 80
gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p 12 80
gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594 12 80
oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus miR-92a-1-5p 12 80
mml-miR-1227 MIMAT0005581 Macaca mulatta miR-1227 12 80
hsa-miR-1227-5p MIMAT0022941 Homo sapiens miR-1227-5p 12 80
mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p 12 80
ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p 12 80
dme-miR-1004-5p MIMAT0032027 Drosophila melanogaster miR-1004-5p 12 80
mdv1-miR-M3-3p MIMAT0009207 Mareks disease miR-M3-3p 12 80
kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated miR-K1... 12 80
mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p 12 80
hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p 12 80
hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p 12 80
hsa-miR-637 MIMAT0003307 Homo sapiens miR-637 12 80
rno-miR-361-3p MIMAT0017199 Rattus norvegicus miR-361-3p 12 80
rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p 12 80
mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p 12 80
hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p 12 80
mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p 12 80
hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p 12 80
>mdo-miR-7364-5p MIMAT0028740 Monodelphis domestica miR-7364-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>hsa-miR-4472 MIMAT0018999 Homo sapiens miR-4472
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 2 gtggggg 8
>hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 2 gtggggg 8
>ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 2 gtggggg 8
>ppy-miR-1275 MIMAT0016199 Pongo pygmaeus miR-1275
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus
miR-rL1-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 2 gtggggg 8
>ptr-miR-1275 MIMAT0007996 Pan troglodytes miR-1275
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggggg 7
|||||||
Sbjct: 1 gtggggg 7
>chi-miR-361-3p MIMAT0036172 Capra hircus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>efu-miR-9313 MIMAT0034988 Eptesicus fuscus miR-9313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>efu-miR-4667 MIMAT0034985 Eptesicus fuscus miR-4667
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>eca-miR-8952 MIMAT0034481 Equus caballus miR-8952
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 8 tggggg 3
>gra-miR7486d MIMAT0034035 Gossypium raimondii miR7486d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 1 gtgggg 6
>ath-miR8181 MIMAT0032780 Arabidopsis thaliana miR8181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>oan-miR-7417-5p MIMAT0028982 Ornithorhynchus anatinus
miR-7417-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 8 gtgggg 3
>mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica
miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-7212-5p MIMAT0028392 Mus musculus miR-7212-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>mml-miR-7200-5p MIMAT0028364 Macaca mulatta miR-7200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>mmu-miR-7117-5p MIMAT0028131 Mus musculus miR-7117-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>hsa-miR-7111-5p MIMAT0028119 Homo sapiens miR-7111-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-7110-5p MIMAT0028117 Homo sapiens miR-7110-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-7085-5p MIMAT0028076 Mus musculus miR-7085-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-7073-5p MIMAT0028052 Mus musculus miR-7073-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-7006-5p MIMAT0027916 Mus musculus miR-7006-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-6971-5p MIMAT0027844 Mus musculus miR-6971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-6910-5p MIMAT0027720 Mus musculus miR-6910-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6870-5p MIMAT0027640 Homo sapiens miR-6870-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6842-5p MIMAT0027586 Homo sapiens miR-6842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>hsa-miR-6796-5p MIMAT0027492 Homo sapiens miR-6796-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>gga-miR-6625-5p MIMAT0025721 Gallus gallus miR-6625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>gga-miR-6594-5p MIMAT0025688 Gallus gallus miR-6594-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>ppe-miR477b-3p MIMAT0027288 Prunus persica miR477b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>ppe-miR477a-3p MIMAT0027287 Prunus persica miR477a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>mml-miR-1296-3p MIMAT0027114 Macaca mulatta miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>gma-miR482e MIMAT0023227 Glycine max miR482e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>hsa-miR-5698 MIMAT0022491 Homo sapiens miR-5698
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>aca-miR-5453 MIMAT0022079 Anolis carolinensis miR-5453
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 8 gtgggg 3
>gma-miR482d-5p MIMAT0021671 Glycine max miR482d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-5129-5p MIMAT0020640 Mus musculus miR-5129-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 8 gtgggg 3
>hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>pma-miR-4589 MIMAT0019622 Petromyzon marinus miR-4589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 1 gtgggg 6
>mmu-miR-3971 MIMAT0019356 Mus musculus miR-3971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 8 gtgggg 3
>gma-miR482b-5p MIMAT0018286 Glycine max miR482b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>tca-miR-3900-5p MIMAT0018904 Tribolium castaneum miR-3900-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>tca-miR-3815-5p MIMAT0018654 Tribolium castaneum miR-3815-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>ssc-miR-1296-3p MIMAT0017976 Sus scrofa miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>ppy-miR-1224-3p MIMAT0016159 Pongo pygmaeus miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 6 gtgggg 1
>ppy-miR-637 MIMAT0016075 Pongo pygmaeus miR-637
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>ppy-miR-361-3p MIMAT0015849 Pongo pygmaeus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>tgu-miR-92-2-5p MIMAT0031032 Taeniopygia guttata miR-92-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 1 gtgggg 6
>ssc-miR-361-3p MIMAT0013934 Sus scrofa miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 6 tggggg 1
>eca-miR-361-3p MIMAT0013209 Equus caballus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>bta-miR-1777a MIMAT0012032 Bos taurus miR-1777a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>bta-miR-2433 MIMAT0012005 Bos taurus miR-2433
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>bta-miR-2431-3p MIMAT0012002 Bos taurus miR-2431-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 8 tggggg 3
>bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>ptr-miR-637 MIMAT0008293 Pan troglodytes miR-637
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>ptr-miR-361 MIMAT0008115 Pan troglodytes miR-361
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>mml-miR-361-3p MIMAT0006287 Macaca mulatta miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>mml-miR-194-3p MIMAT0026837 Macaca mulatta miR-194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>gga-miR-1773-5p MIMAT0007683 Gallus gallus miR-1773-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus
miR-92a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mml-miR-1227 MIMAT0005581 Macaca mulatta miR-1227
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 1 gtgggg 6
>hsa-miR-1227-5p MIMAT0022941 Homo sapiens miR-1227-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 1 gtgggg 6
>mml-miR-1224-3p MIMAT0005571 Macaca mulatta miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 6 gtgggg 1
>ptr-miR-1224-3p MIMAT0005569 Pan troglodytes miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 6 gtgggg 1
>dme-miR-1004-5p MIMAT0032027 Drosophila melanogaster
miR-1004-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>mdv1-miR-M3-3p MIMAT0009207 Mareks disease miR-M3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>kshv-miR-K12-12-3p MIMAT0015238 Kaposi sarcoma-associated
miR-K12-12-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 1 tggggg 6
>mmu-miR-1224-3p MIMAT0017231 Mus musculus miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 6 gtgggg 1
>hsa-miR-1296-3p MIMAT0026637 Homo sapiens miR-1296-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggg 6
||||||
Sbjct: 6 gtgggg 1
>hsa-miR-637 MIMAT0003307 Homo sapiens miR-637
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggggg 7
||||||
Sbjct: 3 tggggg 8
>rno-miR-361-3p MIMAT0017199 Rattus norvegicus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 6 tggggg 1
>rno-miR-92a-2-5p MIMAT0017108 Rattus norvegicus miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>mmu-miR-361-3p MIMAT0017075 Mus musculus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggggg 7
||||||
Sbjct: 7 tggggg 2
>mmu-miR-92a-2-5p MIMAT0004635 Mus musculus miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
>hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggg 6
||||||
Sbjct: 3 gtgggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 142
Number of extensions: 132
Number of successful extensions: 93
Number of sequences better than 100.0: 93
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 93
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
