BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-11-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-1180-5p MIMAT0028264 Macaca mulatta miR-1180-5p 14 20
hsa-miR-7114-3p MIMAT0028126 Homo sapiens miR-7114-3p 14 20
sma-miR-61-5p MIMAT0032138 Schistosoma mansoni miR-61-5p 14 20
hsa-miR-1180-5p MIMAT0026735 Homo sapiens miR-1180-5p 14 20
oha-miR-2985b-5p MIMAT0036874 Ophiophagus hannah miR-2985b-5p 12 80
oha-miR-2985a-5p MIMAT0036871 Ophiophagus hannah miR-2985a-5p 12 80
oha-miR-193-5p MIMAT0036779 Ophiophagus hannah miR-193-5p 12 80
rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896 12 80
eca-miR-9012 MIMAT0034553 Equus caballus miR-9012 12 80
eca-miR-8968 MIMAT0034503 Equus caballus miR-8968 12 80
gra-miR8757b MIMAT0034188 Gossypium raimondii miR8757b 12 80
sma-miR-8433-3p MIMAT0033571 Schistosoma mansoni miR-8433-3p 12 80
ssa-miR-551-3p MIMAT0032664 Salmo salar miR-551-3p 12 80
bbe-miR-4857-3p MIMAT0031736 Branchiostoma belcheri miR-4857-3p 12 80
prd-miR-81-5p MIMAT0030688 Panagrellus redivivus miR-81-5p 12 80
ipu-miR-551 MIMAT0029542 Ictalurus punctatus miR-551 12 80
oan-miR-2985-5p MIMAT0028956 Ornithorhynchus anatinus miR-2985-5p 12 80
mdo-miR-7315-5p MIMAT0028630 Monodelphis domestica miR-7315-5p 12 80
mmu-miR-7213-5p MIMAT0028394 Mus musculus miR-7213-5p 12 80
mml-miR-7181-5p MIMAT0028308 Macaca mulatta miR-7181-5p 12 80
ccr-miR-551 MIMAT0026329 Cyprinus carpio miR-551 12 80
mmu-miR-6953-3p MIMAT0027807 Mus musculus miR-6953-3p 12 80
hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p 12 80
hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p 12 80
hsa-miR-6759-5p MIMAT0027418 Homo sapiens miR-6759-5p 12 80
hsa-miR-6741-5p MIMAT0027383 Homo sapiens miR-6741-5p 12 80
gga-miR-6570-5p MIMAT0025647 Gallus gallus miR-6570-5p 12 80
bta-miR-2285s MIMAT0025576 Bos taurus miR-2285s 12 80
ssc-miR-2366 MIMAT0025388 Sus scrofa miR-2366 12 80
ssc-miR-551a MIMAT0025379 Sus scrofa miR-551a 12 80
nta-miR6154b MIMAT0024756 Nicotiana tabacum miR6154b 12 80
nta-miR6154a MIMAT0024755 Nicotiana tabacum miR6154a 12 80
ggo-miR-551b MIMAT0024188 Gorilla gorilla miR-551b 12 80
ggo-miR-551a MIMAT0024186 Gorilla gorilla miR-551a 12 80
tur-miR-263b-3p MIMAT0023109 Tetranychus urticae miR-263b-3p 12 80
ath-miR5644 MIMAT0022406 Arabidopsis thaliana miR5644 12 80
aca-miR-551 MIMAT0021982 Anolis carolinensis miR-551 12 80
aca-miR-193-5p MIMAT0021826 Anolis carolinensis miR-193-5p 12 80
cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927 12 80
pma-miR-4554 MIMAT0019586 Petromyzon marinus miR-4554 12 80
pma-miR-551 MIMAT0019558 Petromyzon marinus miR-551 12 80
hsa-miR-3940-5p MIMAT0019229 Homo sapiens miR-3940-5p 12 80
tca-miR-3848-3p MIMAT0018745 Tribolium castaneum miR-3848-3p 12 80
cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p 12 80
cin-miR-4083-5p MIMAT0016655 Ciona intestinalis miR-4083-5p 12 80
ppy-miR-1225-5p MIMAT0016160 Pongo pygmaeus miR-1225-5p 12 80
ppy-miR-551b MIMAT0015998 Pongo pygmaeus miR-551b 12 80
ppy-miR-551a MIMAT0015997 Pongo pygmaeus miR-551a 12 80
ppy-miR-193a-5p MIMAT0015787 Pongo pygmaeus miR-193a-5p 12 80
aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p 12 80
mmu-miR-3091-5p MIMAT0014903 Mus musculus miR-3091-5p 12 80
tgu-miR-193b-5p MIMAT0014654 Taeniopygia guttata miR-193b-5p 12 80
tgu-miR-551-3p MIMAT0014541 Taeniopygia guttata miR-551-3p 12 80
tgu-miR-2985 MIMAT0014495 Taeniopygia guttata miR-2985 12 80
ssc-miR-193a-5p MIMAT0013894 Sus scrofa miR-193a-5p 12 80
eca-miR-551b MIMAT0013094 Equus caballus miR-551b 12 80
eca-miR-711 MIMAT0013080 Equus caballus miR-711 12 80
eca-miR-493a MIMAT0013051 Equus caballus miR-493a 12 80
eca-miR-193a-5p MIMAT0013025 Equus caballus miR-193a-5p 12 80
eca-miR-551a MIMAT0012921 Equus caballus miR-551a 12 80
ptr-miR-711 MIMAT0012820 Pan troglodytes miR-711 12 80
mml-miR-711 MIMAT0012796 Macaca mulatta miR-711 12 80
mdo-miR-551b-3p MIMAT0012764 Monodelphis domestica miR-551b-3p 12 80
mdo-miR-551a MIMAT0012763 Monodelphis domestica miR-551a 12 80
hsa-miR-711 MIMAT0012734 Homo sapiens miR-711 12 80
dsi-miR-1003-5p MIMAT0012427 Drosophila simulans miR-1003-5p 12 80
dsi-miR-1012-5p MIMAT0012425 Drosophila simulans miR-1012-5p 12 80
bta-miR-2430 MIMAT0012000 Bos taurus miR-2430 12 80
bta-miR-2366 MIMAT0011904 Bos taurus miR-2366 12 80
cfa-miR-551b MIMAT0009913 Canis familiaris miR-551b 12 80
cfa-miR-551a MIMAT0009912 Canis familiaris miR-551a 12 80
bta-miR-551a MIMAT0009347 Bos taurus miR-551a 12 80
ptr-miR-551b MIMAT0008232 Pan troglodytes miR-551b 12 80
ptr-miR-551a MIMAT0008231 Pan troglodytes miR-551a 12 80
cfa-miR-193a MIMAT0006735 Canis familiaris miR-193a 12 80
mml-miR-551b-3p MIMAT0006420 Macaca mulatta miR-551b-3p 12 80
mml-miR-551a MIMAT0006419 Macaca mulatta miR-551a 12 80
mml-miR-193a-5p MIMAT0006225 Macaca mulatta miR-193a-5p 12 80
gga-miR-193a-5p MIMAT0026787 Gallus gallus miR-193a-5p 12 80
gga-miR-1682 MIMAT0007569 Gallus gallus miR-1682 12 80
cin-miR-1473-5p MIMAT0015245 Ciona intestinalis miR-1473-5p 12 80
gga-miR-551-3p MIMAT0007290 Gallus gallus miR-551-3p 12 80
oan-miR-551-3p MIMAT0007130 Ornithorhynchus anatinus miR-551-3p 12 80
oan-miR-1346 MIMAT0006919 Ornithorhynchus anatinus miR-1346 12 80
mml-miR-1230 MIMAT0005585 Macaca mulatta miR-1230 12 80
hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p 12 80
mml-miR-1225-5p MIMAT0005574 Macaca mulatta miR-1225-5p 12 80
hsa-miR-1225-5p MIMAT0005572 Homo sapiens miR-1225-5p 12 80
mdo-miR-193a-5p MIMAT0026677 Monodelphis domestica miR-193a-5p 12 80
bta-miR-193a-5p MIMAT0003794 Bos taurus miR-193a-5p 12 80
mmu-miR-551b-3p MIMAT0003890 Mus musculus miR-551b-3p 12 80
rlcv-miR-rL1-15-5p MIMAT0019091 Rhesus lymphocryptovirus miR-rL1... 12 80
hsa-miR-551b-3p MIMAT0003233 Homo sapiens miR-551b-3p 12 80
hsa-miR-551a MIMAT0003214 Homo sapiens miR-551a 12 80
dre-miR-193a-5p MIMAT0031981 Danio rerio miR-193a-5p 12 80
rno-miR-193a-5p MIMAT0004736 Rattus norvegicus miR-193a-5p 12 80
hsa-miR-193a-5p MIMAT0004614 Homo sapiens miR-193a-5p 12 80
mmu-miR-193a-5p MIMAT0004544 Mus musculus miR-193a-5p 12 80
cel-miR-42-5p MIMAT0015095 Caenorhabditis elegans miR-42-5p 12 80
>mml-miR-1180-5p MIMAT0028264 Macaca mulatta miR-1180-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgggtc 7
|||||||
Sbjct: 8 gtgggtc 2
>hsa-miR-7114-3p MIMAT0028126 Homo sapiens miR-7114-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgggtc 7
|||||||
Sbjct: 8 gtgggtc 2
>sma-miR-61-5p MIMAT0032138 Schistosoma mansoni miR-61-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgggtc 7
|||||||
Sbjct: 2 gtgggtc 8
>hsa-miR-1180-5p MIMAT0026735 Homo sapiens miR-1180-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgggtc 7
|||||||
Sbjct: 8 gtgggtc 2
>oha-miR-2985b-5p MIMAT0036874 Ophiophagus hannah miR-2985b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>oha-miR-2985a-5p MIMAT0036871 Ophiophagus hannah miR-2985a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>oha-miR-193-5p MIMAT0036779 Ophiophagus hannah miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 3 gtgggt 8
>eca-miR-9012 MIMAT0034553 Equus caballus miR-9012
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>eca-miR-8968 MIMAT0034503 Equus caballus miR-8968
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>gra-miR8757b MIMAT0034188 Gossypium raimondii miR8757b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>sma-miR-8433-3p MIMAT0033571 Schistosoma mansoni miR-8433-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>ssa-miR-551-3p MIMAT0032664 Salmo salar miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>bbe-miR-4857-3p MIMAT0031736 Branchiostoma belcheri miR-4857-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>prd-miR-81-5p MIMAT0030688 Panagrellus redivivus miR-81-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>ipu-miR-551 MIMAT0029542 Ictalurus punctatus miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>oan-miR-2985-5p MIMAT0028956 Ornithorhynchus anatinus
miR-2985-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>mdo-miR-7315-5p MIMAT0028630 Monodelphis domestica miR-7315-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>mmu-miR-7213-5p MIMAT0028394 Mus musculus miR-7213-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>mml-miR-7181-5p MIMAT0028308 Macaca mulatta miR-7181-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>ccr-miR-551 MIMAT0026329 Cyprinus carpio miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mmu-miR-6953-3p MIMAT0027807 Mus musculus miR-6953-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 3 gtgggt 8
>hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 3 gtgggt 8
>hsa-miR-6759-5p MIMAT0027418 Homo sapiens miR-6759-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 3 gtgggt 8
>hsa-miR-6741-5p MIMAT0027383 Homo sapiens miR-6741-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>gga-miR-6570-5p MIMAT0025647 Gallus gallus miR-6570-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>bta-miR-2285s MIMAT0025576 Bos taurus miR-2285s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ssc-miR-2366 MIMAT0025388 Sus scrofa miR-2366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>ssc-miR-551a MIMAT0025379 Sus scrofa miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>nta-miR6154b MIMAT0024756 Nicotiana tabacum miR6154b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>nta-miR6154a MIMAT0024755 Nicotiana tabacum miR6154a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>ggo-miR-551b MIMAT0024188 Gorilla gorilla miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ggo-miR-551a MIMAT0024186 Gorilla gorilla miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>tur-miR-263b-3p MIMAT0023109 Tetranychus urticae miR-263b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>ath-miR5644 MIMAT0022406 Arabidopsis thaliana miR5644
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>aca-miR-551 MIMAT0021982 Anolis carolinensis miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>aca-miR-193-5p MIMAT0021826 Anolis carolinensis miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>cel-miR-4927 MIMAT0020134 Caenorhabditis elegans miR-4927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>pma-miR-4554 MIMAT0019586 Petromyzon marinus miR-4554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>pma-miR-551 MIMAT0019558 Petromyzon marinus miR-551
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>hsa-miR-3940-5p MIMAT0019229 Homo sapiens miR-3940-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>tca-miR-3848-3p MIMAT0018745 Tribolium castaneum miR-3848-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggt 6
||||||
Sbjct: 8 gtgggt 3
>cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggt 6
||||||
Sbjct: 6 gtgggt 1
>cin-miR-4083-5p MIMAT0016655 Ciona intestinalis miR-4083-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>ppy-miR-1225-5p MIMAT0016160 Pongo pygmaeus miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>ppy-miR-551b MIMAT0015998 Pongo pygmaeus miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ppy-miR-551a MIMAT0015997 Pongo pygmaeus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ppy-miR-193a-5p MIMAT0015787 Pongo pygmaeus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 3 gtgggt 8
>mmu-miR-3091-5p MIMAT0014903 Mus musculus miR-3091-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>tgu-miR-193b-5p MIMAT0014654 Taeniopygia guttata miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>tgu-miR-551-3p MIMAT0014541 Taeniopygia guttata miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>tgu-miR-2985 MIMAT0014495 Taeniopygia guttata miR-2985
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>ssc-miR-193a-5p MIMAT0013894 Sus scrofa miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>eca-miR-551b MIMAT0013094 Equus caballus miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>eca-miR-711 MIMAT0013080 Equus caballus miR-711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>eca-miR-493a MIMAT0013051 Equus caballus miR-493a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>eca-miR-193a-5p MIMAT0013025 Equus caballus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>eca-miR-551a MIMAT0012921 Equus caballus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ptr-miR-711 MIMAT0012820 Pan troglodytes miR-711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mml-miR-711 MIMAT0012796 Macaca mulatta miR-711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mdo-miR-551b-3p MIMAT0012764 Monodelphis domestica miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mdo-miR-551a MIMAT0012763 Monodelphis domestica miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>hsa-miR-711 MIMAT0012734 Homo sapiens miR-711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>dsi-miR-1003-5p MIMAT0012427 Drosophila simulans miR-1003-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>dsi-miR-1012-5p MIMAT0012425 Drosophila simulans miR-1012-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>bta-miR-2430 MIMAT0012000 Bos taurus miR-2430
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 3 tgggtc 8
>bta-miR-2366 MIMAT0011904 Bos taurus miR-2366
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>cfa-miR-551b MIMAT0009913 Canis familiaris miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>cfa-miR-551a MIMAT0009912 Canis familiaris miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>bta-miR-551a MIMAT0009347 Bos taurus miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ptr-miR-551b MIMAT0008232 Pan troglodytes miR-551b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>ptr-miR-551a MIMAT0008231 Pan troglodytes miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>cfa-miR-193a MIMAT0006735 Canis familiaris miR-193a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>mml-miR-551b-3p MIMAT0006420 Macaca mulatta miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mml-miR-551a MIMAT0006419 Macaca mulatta miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>mml-miR-193a-5p MIMAT0006225 Macaca mulatta miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>gga-miR-193a-5p MIMAT0026787 Gallus gallus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>gga-miR-1682 MIMAT0007569 Gallus gallus miR-1682
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>cin-miR-1473-5p MIMAT0015245 Ciona intestinalis miR-1473-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggt 6
||||||
Sbjct: 6 gtgggt 1
>gga-miR-551-3p MIMAT0007290 Gallus gallus miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>oan-miR-551-3p MIMAT0007130 Ornithorhynchus anatinus miR-551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>oan-miR-1346 MIMAT0006919 Ornithorhynchus anatinus miR-1346
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>mml-miR-1230 MIMAT0005585 Macaca mulatta miR-1230
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>mml-miR-1225-5p MIMAT0005574 Macaca mulatta miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>hsa-miR-1225-5p MIMAT0005572 Homo sapiens miR-1225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
>mdo-miR-193a-5p MIMAT0026677 Monodelphis domestica miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>bta-miR-193a-5p MIMAT0003794 Bos taurus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>mmu-miR-551b-3p MIMAT0003890 Mus musculus miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>rlcv-miR-rL1-15-5p MIMAT0019091 Rhesus lymphocryptovirus
miR-rL1-15-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgggt 6
||||||
Sbjct: 6 gtgggt 1
>hsa-miR-551b-3p MIMAT0003233 Homo sapiens miR-551b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>hsa-miR-551a MIMAT0003214 Homo sapiens miR-551a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgggtc 7
||||||
Sbjct: 8 tgggtc 3
>dre-miR-193a-5p MIMAT0031981 Danio rerio miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>rno-miR-193a-5p MIMAT0004736 Rattus norvegicus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>hsa-miR-193a-5p MIMAT0004614 Homo sapiens miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>mmu-miR-193a-5p MIMAT0004544 Mus musculus miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgggtc 7
||||||
Sbjct: 1 tgggtc 6
>cel-miR-42-5p MIMAT0015095 Caenorhabditis elegans miR-42-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgggt 6
||||||
Sbjct: 1 gtgggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 125
Number of extensions: 121
Number of successful extensions: 99
Number of sequences better than 100.0: 99
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 99
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
