BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m14-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7669-5p MIMAT0029844 Mus musculus miR-7669-5p 14 20
mdv2-miR-M14-5p MIMAT0004451 Mareks disease miR-M14-5p 14 20
ata-miR9672-3p MIMAT0037129 Aegilops tauschii miR9672-3p 12 80
tae-miR9672b MIMAT0036984 Triticum aestivum miR9672b 12 80
oha-miR-140-3p MIMAT0036720 Ophiophagus hannah miR-140-3p 12 80
efu-miR-9213 MIMAT0034804 Eptesicus fuscus miR-9213 12 80
ppc-miR-8270-5p MIMAT0033032 Pristionchus pacificus miR-8270-5p 12 80
ssa-miR-140-3p MIMAT0032360 Salmo salar miR-140-3p 12 80
stu-miR7996c MIMAT0030884 Solanum tuberosum miR7996c 12 80
stu-miR7996b MIMAT0030883 Solanum tuberosum miR7996b 12 80
stu-miR7996a MIMAT0030882 Solanum tuberosum miR7996a 12 80
ipu-miR-7147 MIMAT0029536 Ictalurus punctatus miR-7147 12 80
mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p 12 80
mdo-miR-7249-5p MIMAT0028464 Monodelphis domestica miR-7249-5p 12 80
dre-miR-7147 MIMAT0028205 Danio rerio miR-7147 12 80
ccr-miR-140-3p MIMAT0026221 Cyprinus carpio miR-140-3p 12 80
pde-miR1313 MIMAT0025350 Pinus densata miR1313 12 80
ppe-miR6291b MIMAT0027333 Prunus persica miR6291b 12 80
ppe-miR6291a MIMAT0027326 Prunus persica miR6291a 12 80
ggo-miR-624 MIMAT0024302 Gorilla gorilla miR-624 12 80
tca-miR-6008-3p MIMAT0023558 Tribolium castaneum miR-6008-3p 12 80
hsa-miR-5579-5p MIMAT0022269 Homo sapiens miR-5579-5p 12 80
aca-miR-140-3p MIMAT0021766 Anolis carolinensis miR-140-3p 12 80
dme-miR-4964-3p MIMAT0020187 Drosophila melanogaster miR-4964-3p 12 80
pma-miR-4621 MIMAT0019655 Petromyzon marinus miR-4621 12 80
gma-miR4375 MIMAT0018279 Glycine max miR4375 12 80
ppy-miR-140-3p MIMAT0015764 Pongo pygmaeus miR-140-3p 12 80
bmo-miR-3293 MIMAT0015480 Bombyx mori miR-3293 12 80
tgu-miR-140-3p MIMAT0014642 Taeniopygia guttata miR-140-3p 12 80
eca-miR-140-3p MIMAT0012927 Equus caballus miR-140-3p 12 80
rno-miR-547-3p MIMAT0012851 Rattus norvegicus miR-547-3p 12 80
mdo-miR-140-3p MIMAT0026937 Monodelphis domestica miR-140-3p 12 80
bmo-miR-2808a-3p MIMAT0013712 Bombyx mori miR-2808a-3p 12 80
bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c 12 80
mtr-miR2597 MIMAT0013287 Medicago truncatula miR2597 12 80
mmu-miR-1957a MIMAT0009430 Mus musculus miR-1957a 12 80
pta-miR1313 MIMAT0009130 Pinus taeda miR1313 12 80
mml-miR-140-3p MIMAT0006198 Macaca mulatta miR-140-3p 12 80
gga-miR-1663-5p MIMAT0007544 Gallus gallus miR-1663-5p 12 80
gga-miR-1658-5p MIMAT0007538 Gallus gallus miR-1658-5p 12 80
oan-miR-150-3p MIMAT0007091 Ornithorhynchus anatinus miR-150-3p 12 80
oan-miR-140-3p MIMAT0006813 Ornithorhynchus anatinus miR-140-3p 12 80
bta-miR-140 MIMAT0003789 Bos taurus miR-140 12 80
hsa-miR-624-5p MIMAT0003293 Homo sapiens miR-624-5p 12 80
mmu-miR-547-3p MIMAT0003173 Mus musculus miR-547-3p 12 80
ssc-miR-140-3p MIMAT0006786 Sus scrofa miR-140-3p 12 80
dre-miR-140-3p MIMAT0003159 Danio rerio miR-140-3p 12 80
rno-miR-140-3p MIMAT0000574 Rattus norvegicus miR-140-3p 12 80
hsa-miR-140-3p MIMAT0004597 Homo sapiens miR-140-3p 12 80
mmu-miR-140-3p MIMAT0000152 Mus musculus miR-140-3p 12 80
>mmu-miR-7669-5p MIMAT0029844 Mus musculus miR-7669-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtggtac 7
|||||||
Sbjct: 8 gtggtac 2
>mdv2-miR-M14-5p MIMAT0004451 Mareks disease miR-M14-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggtac 7
|||||||
Sbjct: 2 gtggtac 8
>ata-miR9672-3p MIMAT0037129 Aegilops tauschii miR9672-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>tae-miR9672b MIMAT0036984 Triticum aestivum miR9672b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>oha-miR-140-3p MIMAT0036720 Ophiophagus hannah miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>efu-miR-9213 MIMAT0034804 Eptesicus fuscus miR-9213
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 1 tggtac 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 8 tggtac 3
>ppc-miR-8270-5p MIMAT0033032 Pristionchus pacificus miR-8270-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>ssa-miR-140-3p MIMAT0032360 Salmo salar miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>stu-miR7996c MIMAT0030884 Solanum tuberosum miR7996c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>stu-miR7996b MIMAT0030883 Solanum tuberosum miR7996b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>stu-miR7996a MIMAT0030882 Solanum tuberosum miR7996a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>ipu-miR-7147 MIMAT0029536 Ictalurus punctatus miR-7147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 7 tggtac 2
>mdo-miR-7391-5p MIMAT0028880 Monodelphis domestica miR-7391-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>mdo-miR-7249-5p MIMAT0028464 Monodelphis domestica miR-7249-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>dre-miR-7147 MIMAT0028205 Danio rerio miR-7147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 7 tggtac 2
>ccr-miR-140-3p MIMAT0026221 Cyprinus carpio miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>pde-miR1313 MIMAT0025350 Pinus densata miR1313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>ppe-miR6291b MIMAT0027333 Prunus persica miR6291b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 8 gtggta 3
>ppe-miR6291a MIMAT0027326 Prunus persica miR6291a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 8 gtggta 3
>ggo-miR-624 MIMAT0024302 Gorilla gorilla miR-624
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 8 tggtac 3
>tca-miR-6008-3p MIMAT0023558 Tribolium castaneum miR-6008-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 8 gtggta 3
>hsa-miR-5579-5p MIMAT0022269 Homo sapiens miR-5579-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>aca-miR-140-3p MIMAT0021766 Anolis carolinensis miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>dme-miR-4964-3p MIMAT0020187 Drosophila melanogaster
miR-4964-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 1 tggtac 6
>pma-miR-4621 MIMAT0019655 Petromyzon marinus miR-4621
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 6 tggtac 1
>gma-miR4375 MIMAT0018279 Glycine max miR4375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>ppy-miR-140-3p MIMAT0015764 Pongo pygmaeus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>bmo-miR-3293 MIMAT0015480 Bombyx mori miR-3293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 1 tggtac 6
>tgu-miR-140-3p MIMAT0014642 Taeniopygia guttata miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>eca-miR-140-3p MIMAT0012927 Equus caballus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>rno-miR-547-3p MIMAT0012851 Rattus norvegicus miR-547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>mdo-miR-140-3p MIMAT0026937 Monodelphis domestica miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>bmo-miR-2808a-3p MIMAT0013712 Bombyx mori miR-2808a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>mtr-miR2597 MIMAT0013287 Medicago truncatula miR2597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>mmu-miR-1957a MIMAT0009430 Mus musculus miR-1957a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggta 6
||||||
Sbjct: 3 gtggta 8
>pta-miR1313 MIMAT0009130 Pinus taeda miR1313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>mml-miR-140-3p MIMAT0006198 Macaca mulatta miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>gga-miR-1663-5p MIMAT0007544 Gallus gallus miR-1663-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>gga-miR-1658-5p MIMAT0007538 Gallus gallus miR-1658-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 8 gtggta 3
>oan-miR-150-3p MIMAT0007091 Ornithorhynchus anatinus miR-150-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>oan-miR-140-3p MIMAT0006813 Ornithorhynchus anatinus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>bta-miR-140 MIMAT0003789 Bos taurus miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>hsa-miR-624-5p MIMAT0003293 Homo sapiens miR-624-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtac 7
||||||
Sbjct: 8 tggtac 3
>mmu-miR-547-3p MIMAT0003173 Mus musculus miR-547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtac 7
||||||
Sbjct: 3 tggtac 8
>ssc-miR-140-3p MIMAT0006786 Sus scrofa miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>dre-miR-140-3p MIMAT0003159 Danio rerio miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>rno-miR-140-3p MIMAT0000574 Rattus norvegicus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>hsa-miR-140-3p MIMAT0004597 Homo sapiens miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
>mmu-miR-140-3p MIMAT0000152 Mus musculus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggta 6
||||||
Sbjct: 6 gtggta 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 81
Number of extensions: 79
Number of successful extensions: 51
Number of sequences better than 100.0: 50
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 51
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
