BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s59
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p 14 20
tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p 14 20
gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p 14 20
ame-miR-9888 MIMAT0037293 Apis mellifera miR-9888 12 80
oha-miR-1905 MIMAT0036774 Ophiophagus hannah miR-1905 12 80
oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p 12 80
chi-miR-876-3p MIMAT0036299 Capra hircus miR-876-3p 12 80
chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p 12 80
rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896 12 80
gsa-miR-9401-3p MIMAT0035351 Gyrodactylus salaris miR-9401-3p 12 80
efu-miR-9186i MIMAT0035144 Eptesicus fuscus miR-9186i 12 80
gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759 12 80
ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus miR-8282a-5p 12 80
bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p 12 80
mmu-miR-497b MIMAT0031404 Mus musculus miR-497b 12 80
gga-miR-7467-3p MIMAT0029089 Gallus gallus miR-7467-3p 12 80
gga-miR-7443-5p MIMAT0029040 Gallus gallus miR-7443-5p 12 80
mml-miR-7171-3p MIMAT0028277 Macaca mulatta miR-7171-3p 12 80
mmu-miR-6769b-5p MIMAT0028040 Mus musculus miR-6769b-5p 12 80
mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p 12 80
hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p 12 80
hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p 12 80
gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p 12 80
hbr-miR6175 MIMAT0024796 Hevea brasiliensis miR6175 12 80
ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654 12 80
ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197 12 80
mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p 12 80
hsa-miR-4733-3p MIMAT0019858 Homo sapiens miR-4733-3p 12 80
oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p 12 80
hsa-miR-4456 MIMAT0018978 Homo sapiens miR-4456 12 80
ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751 12 80
ppy-miR-876-3p MIMAT0016116 Pongo pygmaeus miR-876-3p 12 80
ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p 12 80
ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541 12 80
bta-miR-2898 MIMAT0013856 Bos taurus miR-2898 12 80
eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p 12 80
eca-miR-541 MIMAT0013168 Equus caballus miR-541 12 80
eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p 12 80
eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c 12 80
eca-miR-197 MIMAT0012959 Equus caballus miR-197 12 80
eca-miR-1905a MIMAT0012897 Equus caballus miR-1905a 12 80
mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p 12 80
bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c 12 80
dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura miR-2548-5p 12 80
aqu-miR-2021-3p MIMAT0009754 Amphimedon queenslandica miR-2021-3p 12 80
mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p 12 80
bta-miR-541 MIMAT0009343 Bos taurus miR-541 12 80
bta-miR-197 MIMAT0009257 Bos taurus miR-197 12 80
ptr-miR-876 MIMAT0008327 Pan troglodytes miR-876 12 80
cfa-miR-197 MIMAT0006698 Canis familiaris miR-197 12 80
cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838 12 80
mml-miR-876-3p MIMAT0006520 Macaca mulatta miR-876-3p 12 80
mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p 12 80
mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p 12 80
gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594 12 80
rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p 12 80
ppt-miR1038-3p MIMAT0005147 Physcomitrella patens miR1038-3p 12 80
hsa-miR-876-3p MIMAT0004925 Homo sapiens miR-876-3p 12 80
hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p 12 80
mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p 12 80
rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus miR-rL1-... 12 80
rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p 12 80
hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p 12 80
ppa-miR-197 MIMAT0002604 Pan paniscus miR-197 12 80
age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197 12 80
mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197 12 80
ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197 12 80
ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197 12 80
hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p 12 80
>gga-miR-6712-5p MIMAT0025822 Gallus gallus miR-6712-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggtgg 7
|||||||
Sbjct: 2 gtggtgg 8
>tca-miR-3897-3p MIMAT0018899 Tribolium castaneum miR-3897-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggtgg 7
|||||||
Sbjct: 2 gtggtgg 8
>gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtggtgg 7
|||||||
Sbjct: 2 gtggtgg 8
>ame-miR-9888 MIMAT0037293 Apis mellifera miR-9888
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>oha-miR-1905 MIMAT0036774 Ophiophagus hannah miR-1905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>oha-miR-1306-5p MIMAT0036685 Ophiophagus hannah miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>chi-miR-876-3p MIMAT0036299 Capra hircus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gsa-miR-9401-3p MIMAT0035351 Gyrodactylus salaris miR-9401-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>efu-miR-9186i MIMAT0035144 Eptesicus fuscus miR-9186i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus
miR-8282a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 6 tggtgg 1
>bbe-miR-2057-3p MIMAT0031614 Branchiostoma belcheri miR-2057-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggtg 6
||||||
Sbjct: 3 gtggtg 8
>mmu-miR-497b MIMAT0031404 Mus musculus miR-497b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>gga-miR-7467-3p MIMAT0029089 Gallus gallus miR-7467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>gga-miR-7443-5p MIMAT0029040 Gallus gallus miR-7443-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mml-miR-7171-3p MIMAT0028277 Macaca mulatta miR-7171-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mmu-miR-6769b-5p MIMAT0028040 Mus musculus miR-6769b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggtg 6
||||||
Sbjct: 3 gtggtg 8
>hsa-miR-6880-5p MIMAT0027660 Homo sapiens miR-6880-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>hbr-miR6175 MIMAT0024796 Hevea brasiliensis miR6175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ggo-miR-654 MIMAT0024238 Gorilla gorilla miR-654
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>hsa-miR-4733-3p MIMAT0019858 Homo sapiens miR-4733-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 6 tggtgg 1
>oar-miR-541-3p MIMAT0019324 Ovis aries miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-4456 MIMAT0018978 Homo sapiens miR-4456
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>ame-miR-3751 MIMAT0018521 Apis mellifera miR-3751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggtg 6
||||||
Sbjct: 3 gtggtg 8
>ppy-miR-876-3p MIMAT0016116 Pongo pygmaeus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppy-miR-654-5p MIMAT0016087 Pongo pygmaeus miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppy-miR-541 MIMAT0015990 Pongo pygmaeus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>bta-miR-2898 MIMAT0013856 Bos taurus miR-2898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>eca-miR-541 MIMAT0013168 Equus caballus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>eca-miR-876-3p MIMAT0013122 Equus caballus miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtggtg 6
||||||
Sbjct: 3 gtggtg 8
>eca-miR-1905c MIMAT0012985 Equus caballus miR-1905c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 8 tggtgg 3
>eca-miR-197 MIMAT0012959 Equus caballus miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>eca-miR-1905a MIMAT0012897 Equus caballus miR-1905a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>mml-miR-541-3p MIMAT0026951 Macaca mulatta miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>bmo-miR-2808c MIMAT0013671 Bombyx mori miR-2808c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>dps-miR-2548-5p MIMAT0012356 Drosophila pseudoobscura
miR-2548-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>aqu-miR-2021-3p MIMAT0009754 Amphimedon queenslandica
miR-2021-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mmu-miR-1306-5p MIMAT0019136 Mus musculus miR-1306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>bta-miR-541 MIMAT0009343 Bos taurus miR-541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>bta-miR-197 MIMAT0009257 Bos taurus miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>ptr-miR-876 MIMAT0008327 Pan troglodytes miR-876
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>cfa-miR-197 MIMAT0006698 Canis familiaris miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggtgg 7
||||||
Sbjct: 6 tggtgg 1
>mml-miR-876-3p MIMAT0006520 Macaca mulatta miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mml-miR-654-5p MIMAT0006495 Macaca mulatta miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>gga-miR-1594 MIMAT0007457 Gallus gallus miR-1594
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>ppt-miR1038-3p MIMAT0005147 Physcomitrella patens miR1038-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 3 tggtgg 8
>hsa-miR-876-3p MIMAT0004925 Homo sapiens miR-876-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>hsa-miR-541-3p MIMAT0004920 Homo sapiens miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>rlcv-miR-rL1-5-3p MIMAT0003433 Rhesus lymphocryptovirus
miR-rL1-5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus
miR-rL1-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 6 gtggtg 1
>ebv-miR-BART3-3p MIMAT0003411 Epstein Barr miR-BART3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggtgg 7
||||||
Sbjct: 1 tggtgg 6
>ppa-miR-197 MIMAT0002604 Pan paniscus miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
>hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtggtg 6
||||||
Sbjct: 8 gtggtg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 99
Number of extensions: 96
Number of successful extensions: 72
Number of sequences better than 100.0: 70
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
