BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8737 MIMAT0034149 Gossypium raimondii miR8737 14 20
rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216 14 20
mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199 14 20
mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p 14 20
dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p 14 20
oha-miR-223-5p MIMAT0036852 Ophiophagus hannah miR-223-5p 12 80
gma-miR9764 MIMAT0036401 Glycine max miR9764 12 80
ath-miR8174 MIMAT0032773 Arabidopsis thaliana miR8174 12 80
bdi-miR7728-3p MIMAT0030189 Brachypodium distachyon miR7728-3p 12 80
mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica miR-7371b-5p 12 80
tur-miR-137-5p MIMAT0023098 Tetranychus urticae miR-137-5p 12 80
bdi-miR5066 MIMAT0020573 Brachypodium distachyon miR5066 12 80
dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster miR-4909-3p 12 80
sko-miR-4827b MIMAT0020035 Saccoglossus kowalevskii miR-4827b 12 80
hsa-miR-4789-5p MIMAT0019959 Homo sapiens miR-4789-5p 12 80
mmu-miR-3963 MIMAT0019341 Mus musculus miR-3963 12 80
far-miR1122 MIMAT0018366 Festuca arundinacea miR1122 12 80
tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p 12 80
tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p 12 80
aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247 12 80
cin-miR-4047-3p MIMAT0016584 Ciona intestinalis miR-4047-3p 12 80
hsa-miR-466 MIMAT0015002 Homo sapiens miR-466 12 80
dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p 12 80
dsi-miR-137-5p MIMAT0012493 Drosophila simulans miR-137-5p 12 80
dps-miR-2552-3p MIMAT0012365 Drosophila pseudoobscura miR-2552-3p 12 80
dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura miR-iab-8-3p 12 80
dps-miR-137-5p MIMAT0012237 Drosophila pseudoobscura miR-137-5p 12 80
bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122 12 80
bta-miR-2318 MIMAT0011841 Bos taurus miR-2318 12 80
tca-miR-137-5p MIMAT0019117 Tribolium castaneum miR-137-5p 12 80
oan-miR-1421l-1-3p MIMAT0007069 Ornithorhynchus anatinus miR-142... 12 80
mmu-miR-467f MIMAT0005846 Mus musculus miR-467f 12 80
mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p 12 80
tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a 12 80
dme-miR-137-5p MIMAT0020888 Drosophila melanogaster miR-137-5p 12 80
mdo-miR-223-5p MIMAT0026682 Monodelphis domestica miR-223-5p 12 80
cel-miR-248 MIMAT0000304 Caenorhabditis elegans miR-248 12 80
>gra-miR8737 MIMAT0034149 Gossypium raimondii miR8737
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgtatc 7
|||||||
Sbjct: 1 gtgtatc 7
>rno-miR-6216 MIMAT0024856 Rattus norvegicus miR-6216
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgtatc 7
|||||||
Sbjct: 7 gtgtatc 1
>mtr-miR2199 MIMAT0011319 Medicago truncatula miR2199
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgtatc 7
|||||||
Sbjct: 8 gtgtatc 2
>mdv1-miR-M5-3p MIMAT0003926 Mareks disease miR-M5-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgtatc 7
|||||||
Sbjct: 2 gtgtatc 8
>dme-miR-318-5p MIMAT0020844 Drosophila melanogaster miR-318-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtgtatc 7
|||||||
Sbjct: 8 gtgtatc 2
>oha-miR-223-5p MIMAT0036852 Ophiophagus hannah miR-223-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 1 gtgtat 6
>gma-miR9764 MIMAT0036401 Glycine max miR9764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>ath-miR8174 MIMAT0032773 Arabidopsis thaliana miR8174
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>bdi-miR7728-3p MIMAT0030189 Brachypodium distachyon miR7728-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 8 gtgtat 3
>mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica
miR-7371b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 3 tgtatc 8
>tur-miR-137-5p MIMAT0023098 Tetranychus urticae miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 1 gtgtat 6
>bdi-miR5066 MIMAT0020573 Brachypodium distachyon miR5066
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>dme-miR-4909-3p MIMAT0020515 Drosophila melanogaster
miR-4909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 3 tgtatc 8
>sko-miR-4827b MIMAT0020035 Saccoglossus kowalevskii miR-4827b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>hsa-miR-4789-5p MIMAT0019959 Homo sapiens miR-4789-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 8 gtgtat 3
>mmu-miR-3963 MIMAT0019341 Mus musculus miR-3963
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>far-miR1122 MIMAT0018366 Festuca arundinacea miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>tca-miR-3853-5p MIMAT0018762 Tribolium castaneum miR-3853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>tca-miR-iab-8-3p MIMAT0018699 Tribolium castaneum miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>aly-miR4247 MIMAT0017936 Arabidopsis lyrata miR4247
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>cin-miR-4047-3p MIMAT0016584 Ciona intestinalis miR-4047-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>hsa-miR-466 MIMAT0015002 Homo sapiens miR-466
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 6 gtgtat 1
>dsi-miR-iab-8-3p MIMAT0012505 Drosophila simulans miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>dsi-miR-137-5p MIMAT0012493 Drosophila simulans miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>dps-miR-2552-3p MIMAT0012365 Drosophila pseudoobscura
miR-2552-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>dps-miR-iab-8-3p MIMAT0012285 Drosophila pseudoobscura
miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>dps-miR-137-5p MIMAT0012237 Drosophila pseudoobscura miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>bdi-miR1122 MIMAT0012183 Brachypodium distachyon miR1122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>bta-miR-2318 MIMAT0011841 Bos taurus miR-2318
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 1 gtgtat 6
>tca-miR-137-5p MIMAT0019117 Tribolium castaneum miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>oan-miR-1421l-1-3p MIMAT0007069 Ornithorhynchus anatinus
miR-1421l-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtatc 7
||||||
Sbjct: 1 tgtatc 6
>mmu-miR-467f MIMAT0005846 Mus musculus miR-467f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 8 gtgtat 3
>mmu-miR-466i-3p MIMAT0005834 Mus musculus miR-466i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 6 gtgtat 1
>tae-miR1122a MIMAT0005357 Triticum aestivum miR1122a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtatc 7
||||||
Sbjct: 8 tgtatc 3
>dme-miR-137-5p MIMAT0020888 Drosophila melanogaster miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 3 gtgtat 8
>mdo-miR-223-5p MIMAT0026682 Monodelphis domestica miR-223-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtat 6
||||||
Sbjct: 1 gtgtat 6
>cel-miR-248 MIMAT0000304 Caenorhabditis elegans miR-248
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtat 6
||||||
Sbjct: 6 gtgtat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 53
Number of extensions: 48
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
