BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s36
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nta-miR6148b MIMAT0024738 Nicotiana tabacum miR6148b 14 20
aly-miR398c-3p MIMAT0017570 Arabidopsis lyrata miR398c-3p 14 20
sme-miR-2167 MIMAT0011264 Schmidtea mediterranea miR-2167 14 20
hsa-miR-2053 MIMAT0009978 Homo sapiens miR-2053 14 20
oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a 12 80
tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p 12 80
tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p 12 80
gma-miR4348c MIMAT0036389 Glycine max miR4348c 12 80
ocu-miR-302c-5p MIMAT0036318 Oryctolagus cuniculus miR-302c-5p 12 80
chi-miR-200a MIMAT0036045 Capra hircus miR-200a 12 80
chi-miR-141 MIMAT0035962 Capra hircus miR-141 12 80
dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p 12 80
dvi-miR-999-3p MIMAT0035615 Drosophila virilis miR-999-3p 12 80
efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141 12 80
efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a 12 80
gra-miR8762a MIMAT0034192 Gossypium raimondii miR8762a 12 80
ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p 12 80
bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p 12 80
ppe-miR6274b-3p MIMAT0031553 Prunus persica miR6274b-3p 12 80
ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a 12 80
ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141 12 80
mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p 12 80
ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a 12 80
ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a 12 80
cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141 12 80
hco-miR-5892b MIMAT0023486 Haemonchus contortus miR-5892b 12 80
hco-miR-5892a MIMAT0023331 Haemonchus contortus miR-5892a 12 80
sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141 12 80
sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a 12 80
ath-miR5635c MIMAT0022428 Arabidopsis thaliana miR5635c 12 80
ath-miR5635b MIMAT0022418 Arabidopsis thaliana miR5635b 12 80
ath-miR5635d MIMAT0022405 Arabidopsis thaliana miR5635d 12 80
ath-miR5635a MIMAT0022395 Arabidopsis thaliana miR5635a 12 80
aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p 12 80
sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a 12 80
cel-miR-4811-3p MIMAT0019997 Caenorhabditis elegans miR-4811-3p 12 80
hsa-miR-4694-5p MIMAT0019786 Homo sapiens miR-4694-5p 12 80
gma-miR4382 MIMAT0018289 Glycine max miR4382 12 80
ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a 12 80
tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p 12 80
cqu-miR-999 MIMAT0014370 Culex quinquefasciatus miR-999 12 80
aae-miR-999 MIMAT0014257 Aedes aegypti miR-999 12 80
eca-miR-141 MIMAT0012970 Equus caballus miR-141 12 80
eca-miR-200a MIMAT0012909 Equus caballus miR-200a 12 80
rno-miR-544-5p MIMAT0017359 Rattus norvegicus miR-544-5p 12 80
mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b 12 80
mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a 12 80
dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a 12 80
dsi-miR-999-3p MIMAT0012456 Drosophila simulans miR-999-3p 12 80
dps-miR-2562-3p MIMAT0012387 Drosophila pseudoobscura miR-2562-3p 12 80
cfa-miR-302c MIMAT0009857 Canis familiaris miR-302c 12 80
nve-miR-2024g-3p MIMAT0009775 Nematostella vectensis miR-2024g-3p 12 80
bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c 12 80
bta-miR-141 MIMAT0009232 Bos taurus miR-141 12 80
ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a 12 80
ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141 12 80
mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p 12 80
csa-miR-141 MIMAT0006129 Ciona savignyi miR-141 12 80
cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p 12 80
oan-miR-302-5p MIMAT0007194 Ornithorhynchus anatinus miR-302-5p 12 80
oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus miR-200a-3p 12 80
dme-miR-999-3p MIMAT0005519 Drosophila melanogaster miR-999-3p 12 80
mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p 12 80
mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p 12 80
bta-miR-200a MIMAT0003822 Bos taurus miR-200a 12 80
xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a 12 80
ebv-miR-BART9-3p MIMAT0003419 Epstein Barr miR-BART9-3p 12 80
gga-miR-302c-5p MIMAT0003358 Gallus gallus miR-302c-5p 12 80
tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a 12 80
fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a 12 80
dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p 12 80
dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p 12 80
gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p 12 80
rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p 12 80
rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p 12 80
hsa-miR-302c-5p MIMAT0000716 Homo sapiens miR-302c-5p 12 80
hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p 12 80
mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p 12 80
hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p 12 80
mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p 12 80
>nta-miR6148b MIMAT0024738 Nicotiana tabacum miR6148b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgttaa 7
|||||||
Sbjct: 2 gtgttaa 8
>aly-miR398c-3p MIMAT0017570 Arabidopsis lyrata miR398c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgttaa 7
|||||||
Sbjct: 2 gtgttaa 8
>sme-miR-2167 MIMAT0011264 Schmidtea mediterranea miR-2167
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgttaa 7
|||||||
Sbjct: 2 gtgttaa 8
>hsa-miR-2053 MIMAT0009978 Homo sapiens miR-2053
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtgttaa 7
|||||||
Sbjct: 1 gtgttaa 7
>oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>gma-miR4348c MIMAT0036389 Glycine max miR4348c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>ocu-miR-302c-5p MIMAT0036318 Oryctolagus cuniculus miR-302c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 7 tgttaa 2
>chi-miR-200a MIMAT0036045 Capra hircus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>chi-miR-141 MIMAT0035962 Capra hircus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtta 6
||||||
Sbjct: 3 gtgtta 8
>dvi-miR-999-3p MIMAT0035615 Drosophila virilis miR-999-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>gra-miR8762a MIMAT0034192 Gossypium raimondii miR8762a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 6 tgttaa 1
>ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ppe-miR6274b-3p MIMAT0031553 Prunus persica miR6274b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtta 6
||||||
Sbjct: 3 gtgtta 8
>ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>hco-miR-5892b MIMAT0023486 Haemonchus contortus miR-5892b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 8 tgttaa 3
>hco-miR-5892a MIMAT0023331 Haemonchus contortus miR-5892a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 8 tgttaa 3
>sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ath-miR5635c MIMAT0022428 Arabidopsis thaliana miR5635c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>ath-miR5635b MIMAT0022418 Arabidopsis thaliana miR5635b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>ath-miR5635d MIMAT0022405 Arabidopsis thaliana miR5635d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>ath-miR5635a MIMAT0022395 Arabidopsis thaliana miR5635a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>cel-miR-4811-3p MIMAT0019997 Caenorhabditis elegans miR-4811-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 8 gtgtta 3
>hsa-miR-4694-5p MIMAT0019786 Homo sapiens miR-4694-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtgtta 6
||||||
Sbjct: 3 gtgtta 8
>gma-miR4382 MIMAT0018289 Glycine max miR4382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 3 tgttaa 8
>ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>cqu-miR-999 MIMAT0014370 Culex quinquefasciatus miR-999
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>aae-miR-999 MIMAT0014257 Aedes aegypti miR-999
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>eca-miR-141 MIMAT0012970 Equus caballus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>eca-miR-200a MIMAT0012909 Equus caballus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>rno-miR-544-5p MIMAT0017359 Rattus norvegicus miR-544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 3 tgttaa 8
>mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>dsi-miR-982a MIMAT0012515 Drosophila simulans miR-982a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 6 tgttaa 1
>dsi-miR-999-3p MIMAT0012456 Drosophila simulans miR-999-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>dps-miR-2562-3p MIMAT0012387 Drosophila pseudoobscura
miR-2562-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 6 tgttaa 1
>cfa-miR-302c MIMAT0009857 Canis familiaris miR-302c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 7 tgttaa 2
>nve-miR-2024g-3p MIMAT0009775 Nematostella vectensis
miR-2024g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>bta-miR-141 MIMAT0009232 Bos taurus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>csa-miR-141 MIMAT0006129 Ciona savignyi miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>oan-miR-302-5p MIMAT0007194 Ornithorhynchus anatinus miR-302-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 7 tgttaa 2
>oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus
miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>dme-miR-999-3p MIMAT0005519 Drosophila melanogaster miR-999-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgttaa 7
||||||
Sbjct: 1 tgttaa 6
>mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>bta-miR-200a MIMAT0003822 Bos taurus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>ebv-miR-BART9-3p MIMAT0003419 Epstein Barr miR-BART9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>gga-miR-302c-5p MIMAT0003358 Gallus gallus miR-302c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 7 tgttaa 2
>tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>hsa-miR-302c-5p MIMAT0000716 Homo sapiens miR-302c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgttaa 7
||||||
Sbjct: 7 tgttaa 2
>hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
>mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtgtta 6
||||||
Sbjct: 6 gtgtta 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 95
Number of extensions: 91
Number of successful extensions: 80
Number of sequences better than 100.0: 80
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 80
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
