BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m7-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon miR7757-3p.2     14      20
dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p         14      20
mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p                   14      20
oha-miR-101a-5p MIMAT0036650 Ophiophagus hannah miR-101a-5p            12      80
cfa-miR-8895 MIMAT0034403 Canis familiaris miR-8895                    12      80
ssa-miR-101b-5p MIMAT0032282 Salmo salar miR-101b-5p                   12      80
mdo-miR-7386l-5p MIMAT0028854 Monodelphis domestica miR-7386l-5p       12      80
mdo-miR-7337-3p MIMAT0028683 Monodelphis domestica miR-7337-3p         12      80
ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577                       12      80
cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p            12      80
cin-miR-4179b-5p MIMAT0022335 Ciona intestinalis miR-4179b-5p          12      80
xbo-miR-4907 MIMAT0020124 Xenoturbella bocki miR-4907                  12      80
oar-miR-494-5p MIMAT0019267 Ovis aries miR-494-5p                      12      80
csi-miR3951 MIMAT0018492 Citrus sinensis miR3951                       12      80
ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577                        12      80
bmo-miR-3353 MIMAT0015538 Bombyx mori miR-3353                         12      80
bta-miR-2335 MIMAT0011868 Bos taurus miR-2335                          12      80
sme-miR-754c-1-3p MIMAT0011414 Schmidtea mediterranea miR-754c-1-3p    12      80
ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577                       12      80
osa-miR1428e-3p MIMAT0007785 Oryza sativa miR1428e-3p                  12      80
osa-miR1428d MIMAT0007783 Oryza sativa miR1428d                        12      80
osa-miR1428c MIMAT0007782 Oryza sativa miR1428c                        12      80
osa-miR1428b MIMAT0007781 Oryza sativa miR1428b                        12      80
mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p                  12      80
gga-miR-1749-5p MIMAT0007654 Gallus gallus miR-1749-5p                 12      80
osa-miR1428a-3p MIMAT0007280 Oryza sativa miR1428a-3p                  12      80
hsa-miR-577 MIMAT0003242 Homo sapiens miR-577                          12      80
mmu-miR-487b-5p MIMAT0017216 Mus musculus miR-487b-5p                  12      80
ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a                     12      80
hsa-miR-101-5p MIMAT0004513 Homo sapiens miR-101-5p                    12      80
>bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon
         miR7757-3p.2
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gttatct 7
         |||||||
Sbjct: 7 gttatct 1
>dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gttatct 7
         |||||||
Sbjct: 8 gttatct 2
>mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gttatct 7
         |||||||
Sbjct: 2 gttatct 8
>oha-miR-101a-5p MIMAT0036650 Ophiophagus hannah miR-101a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>cfa-miR-8895 MIMAT0034403 Canis familiaris miR-8895
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 1 ttatct 6
>ssa-miR-101b-5p MIMAT0032282 Salmo salar miR-101b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>mdo-miR-7386l-5p MIMAT0028854 Monodelphis domestica
         miR-7386l-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>mdo-miR-7337-3p MIMAT0028683 Monodelphis domestica miR-7337-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>cin-miR-4179b-5p MIMAT0022335 Ciona intestinalis miR-4179b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 1 ttatct 6
>xbo-miR-4907 MIMAT0020124 Xenoturbella bocki miR-4907
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>oar-miR-494-5p MIMAT0019267 Ovis aries miR-494-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>csi-miR3951 MIMAT0018492 Citrus sinensis miR3951
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 7 ttatct 2
>ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 7 ttatct 2
>bmo-miR-3353 MIMAT0015538 Bombyx mori miR-3353
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>bta-miR-2335 MIMAT0011868 Bos taurus miR-2335
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 6 ttatct 1
>sme-miR-754c-1-3p MIMAT0011414 Schmidtea mediterranea
         miR-754c-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 3 ttatct 8
>ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 7 ttatct 2
>osa-miR1428e-3p MIMAT0007785 Oryza sativa miR1428e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>osa-miR1428d MIMAT0007783 Oryza sativa miR1428d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>osa-miR1428c MIMAT0007782 Oryza sativa miR1428c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>osa-miR1428b MIMAT0007781 Oryza sativa miR1428b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 7 ttatct 2
>gga-miR-1749-5p MIMAT0007654 Gallus gallus miR-1749-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 6 ttatct 1
>osa-miR1428a-3p MIMAT0007280 Oryza sativa miR1428a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 8 ttatct 3
>hsa-miR-577 MIMAT0003242 Homo sapiens miR-577
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 7 ttatct 2
>mmu-miR-487b-5p MIMAT0017216 Mus musculus miR-487b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
>ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttatct 7
         ||||||
Sbjct: 1 ttatct 6
>hsa-miR-101-5p MIMAT0004513 Homo sapiens miR-101-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gttatc 6
         ||||||
Sbjct: 3 gttatc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 35
Number of successful extensions: 30
Number of sequences better than 100.0: 30
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 30
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)