BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon miR7757-3p.2 14 20
dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p 14 20
mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p 14 20
oha-miR-101a-5p MIMAT0036650 Ophiophagus hannah miR-101a-5p 12 80
cfa-miR-8895 MIMAT0034403 Canis familiaris miR-8895 12 80
ssa-miR-101b-5p MIMAT0032282 Salmo salar miR-101b-5p 12 80
mdo-miR-7386l-5p MIMAT0028854 Monodelphis domestica miR-7386l-5p 12 80
mdo-miR-7337-3p MIMAT0028683 Monodelphis domestica miR-7337-3p 12 80
ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577 12 80
cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p 12 80
cin-miR-4179b-5p MIMAT0022335 Ciona intestinalis miR-4179b-5p 12 80
xbo-miR-4907 MIMAT0020124 Xenoturbella bocki miR-4907 12 80
oar-miR-494-5p MIMAT0019267 Ovis aries miR-494-5p 12 80
csi-miR3951 MIMAT0018492 Citrus sinensis miR3951 12 80
ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577 12 80
bmo-miR-3353 MIMAT0015538 Bombyx mori miR-3353 12 80
bta-miR-2335 MIMAT0011868 Bos taurus miR-2335 12 80
sme-miR-754c-1-3p MIMAT0011414 Schmidtea mediterranea miR-754c-1-3p 12 80
ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577 12 80
osa-miR1428e-3p MIMAT0007785 Oryza sativa miR1428e-3p 12 80
osa-miR1428d MIMAT0007783 Oryza sativa miR1428d 12 80
osa-miR1428c MIMAT0007782 Oryza sativa miR1428c 12 80
osa-miR1428b MIMAT0007781 Oryza sativa miR1428b 12 80
mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p 12 80
gga-miR-1749-5p MIMAT0007654 Gallus gallus miR-1749-5p 12 80
osa-miR1428a-3p MIMAT0007280 Oryza sativa miR1428a-3p 12 80
hsa-miR-577 MIMAT0003242 Homo sapiens miR-577 12 80
mmu-miR-487b-5p MIMAT0017216 Mus musculus miR-487b-5p 12 80
ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a 12 80
hsa-miR-101-5p MIMAT0004513 Homo sapiens miR-101-5p 12 80
>bdi-miR7757-3p.2 MIMAT0030260 Brachypodium distachyon
miR7757-3p.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttatct 7
|||||||
Sbjct: 7 gttatct 1
>dme-miR-977-5p MIMAT0020874 Drosophila melanogaster miR-977-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttatct 7
|||||||
Sbjct: 8 gttatct 2
>mdv1-miR-M7-5p MIMAT0005804 Mareks disease miR-M7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttatct 7
|||||||
Sbjct: 2 gttatct 8
>oha-miR-101a-5p MIMAT0036650 Ophiophagus hannah miR-101a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>cfa-miR-8895 MIMAT0034403 Canis familiaris miR-8895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttatct 7
||||||
Sbjct: 1 ttatct 6
>ssa-miR-101b-5p MIMAT0032282 Salmo salar miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>mdo-miR-7386l-5p MIMAT0028854 Monodelphis domestica
miR-7386l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>mdo-miR-7337-3p MIMAT0028683 Monodelphis domestica miR-7337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>ggo-miR-577 MIMAT0024165 Gorilla gorilla miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>cgr-miR-101b-5p MIMAT0023728 Cricetulus griseus miR-101b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>cin-miR-4179b-5p MIMAT0022335 Ciona intestinalis miR-4179b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttatct 7
||||||
Sbjct: 1 ttatct 6
>xbo-miR-4907 MIMAT0020124 Xenoturbella bocki miR-4907
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>oar-miR-494-5p MIMAT0019267 Ovis aries miR-494-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>csi-miR3951 MIMAT0018492 Citrus sinensis miR3951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 7 ttatct 2
>ppy-miR-577 MIMAT0016019 Pongo pygmaeus miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 7 ttatct 2
>bmo-miR-3353 MIMAT0015538 Bombyx mori miR-3353
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>bta-miR-2335 MIMAT0011868 Bos taurus miR-2335
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 6 ttatct 1
>sme-miR-754c-1-3p MIMAT0011414 Schmidtea mediterranea
miR-754c-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttatct 7
||||||
Sbjct: 3 ttatct 8
>ptr-miR-577 MIMAT0008251 Pan troglodytes miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 7 ttatct 2
>osa-miR1428e-3p MIMAT0007785 Oryza sativa miR1428e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>osa-miR1428d MIMAT0007783 Oryza sativa miR1428d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>osa-miR1428c MIMAT0007782 Oryza sativa miR1428c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>osa-miR1428b MIMAT0007781 Oryza sativa miR1428b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>mml-miR-577-5p MIMAT0006438 Macaca mulatta miR-577-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 7 ttatct 2
>gga-miR-1749-5p MIMAT0007654 Gallus gallus miR-1749-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 6 ttatct 1
>osa-miR1428a-3p MIMAT0007280 Oryza sativa miR1428a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 8 ttatct 3
>hsa-miR-577 MIMAT0003242 Homo sapiens miR-577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttatct 7
||||||
Sbjct: 7 ttatct 2
>mmu-miR-487b-5p MIMAT0017216 Mus musculus miR-487b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
>ptr-miR-216a MIMAT0002559 Pan troglodytes miR-216a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttatct 7
||||||
Sbjct: 1 ttatct 6
>hsa-miR-101-5p MIMAT0004513 Homo sapiens miR-101-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttatc 6
||||||
Sbjct: 3 gttatc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 35
Number of successful extensions: 30
Number of sequences better than 100.0: 30
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 30
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)