BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-55593
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p 14 27
prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus miR-7950b-5p 14 27
ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197 14 27
mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p 14 27
eca-miR-197 MIMAT0012959 Equus caballus miR-197 14 27
bta-miR-197 MIMAT0009257 Bos taurus miR-197 14 27
osa-miR1854-5p MIMAT0007775 Oryza sativa miR1854-5p 14 27
cfa-miR-197 MIMAT0006698 Canis familiaris miR-197 14 27
mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p 14 27
ppt-miR1046-3p MIMAT0005160 Physcomitrella patens miR1046-3p 14 27
ppa-miR-197 MIMAT0002604 Pan paniscus miR-197 14 27
age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197 14 27
mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197 14 27
ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197 14 27
ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197 14 27
hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p 14 27
>chi-miR-197-3p MIMAT0036035 Capra hircus miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>prd-miR-7950b-5p MIMAT0030816 Panagrellus redivivus
miR-7950b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttcacc 7
|||||||
Sbjct: 1 gttcacc 7
>ggo-miR-197 MIMAT0024180 Gorilla gorilla miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>mmu-miR-5622-5p MIMAT0022371 Mus musculus miR-5622-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>eca-miR-197 MIMAT0012959 Equus caballus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>bta-miR-197 MIMAT0009257 Bos taurus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>osa-miR1854-5p MIMAT0007775 Oryza sativa miR1854-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcacca 8
|||||||
Sbjct: 7 ttcacca 1
>cfa-miR-197 MIMAT0006698 Canis familiaris miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>mml-miR-197-3p MIMAT0006230 Macaca mulatta miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>ppt-miR1046-3p MIMAT0005160 Physcomitrella patens miR1046-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcacca 8
|||||||
Sbjct: 7 ttcacca 1
>ppa-miR-197 MIMAT0002604 Pan paniscus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>age-miR-197 MIMAT0002603 Ateles geoffroyi miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>mne-miR-197 MIMAT0002602 Macaca nemestrina miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>ppy-miR-197 MIMAT0002601 Pongo pygmaeus miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>ptr-miR-197 MIMAT0002600 Pan troglodytes miR-197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
>hsa-miR-197-3p MIMAT0000227 Homo sapiens miR-197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcacca 8
|||||||
Sbjct: 1 ttcacca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 122
Number of successful extensions: 104
Number of sequences better than 100.0: 16
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
