BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s9
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus miR-8282a-5p 14 27
mmu-miR-6934-5p MIMAT0027768 Mus musculus miR-6934-5p 14 27
gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p 14 27
ath-miR5665 MIMAT0022443 Arabidopsis thaliana miR5665 14 27
sbi-miR5385 MIMAT0021683 Sorghum bicolor miR5385 14 27
aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p 14 27
bmo-miR-3278 MIMAT0015463 Bombyx mori miR-3278 14 27
hma-miR-3005 MIMAT0014672 Hydra magnipapillata miR-3005 14 27
sly-miR1918 MIMAT0007910 Solanum lycopersicum miR1918 14 27
cin-miR-200-5p MIMAT0015263 Ciona intestinalis miR-200-5p 14 27
rno-miR-181a-2-3p MIMAT0017138 Rattus norvegicus miR-181a-2-3p 14 27
>ppc-miR-8282a-5p MIMAT0033067 Pristionchus pacificus
miR-8282a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttggtgg 8
|||||||
Sbjct: 7 ttggtgg 1
>mmu-miR-6934-5p MIMAT0027768 Mus musculus miR-6934-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgg 8
|||||||
Sbjct: 1 ttggtgg 7
>gga-miR-6607-5p MIMAT0025701 Gallus gallus miR-6607-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttggtg 7
|||||||
Sbjct: 2 gttggtg 8
>ath-miR5665 MIMAT0022443 Arabidopsis thaliana miR5665
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgg 8
|||||||
Sbjct: 1 ttggtgg 7
>sbi-miR5385 MIMAT0021683 Sorghum bicolor miR5385
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttggtgg 8
|||||||
Sbjct: 8 ttggtgg 2
>aly-miR839-5p MIMAT0017623 Arabidopsis lyrata miR839-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttggtg 7
|||||||
Sbjct: 7 gttggtg 1
>bmo-miR-3278 MIMAT0015463 Bombyx mori miR-3278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgg 8
|||||||
Sbjct: 1 ttggtgg 7
>hma-miR-3005 MIMAT0014672 Hydra magnipapillata miR-3005
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttggtgg 8
|||||||
Sbjct: 1 ttggtgg 7
>sly-miR1918 MIMAT0007910 Solanum lycopersicum miR1918
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttggtg 7
|||||||
Sbjct: 2 gttggtg 8
>cin-miR-200-5p MIMAT0015263 Ciona intestinalis miR-200-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttggtg 7
|||||||
Sbjct: 8 gttggtg 2
>rno-miR-181a-2-3p MIMAT0017138 Rattus norvegicus miR-181a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttggtgg 8
|||||||
Sbjct: 8 ttggtgg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 127
Number of successful extensions: 98
Number of sequences better than 100.0: 11
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
