BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
stu-miR6026-5p MIMAT0031164 Solanum tuberosum miR6026-5p 16 6.9
mdv1-miR-M2-5p MIMAT0003921 Mareks disease miR-M2-5p 16 6.9
eca-miR-9023 MIMAT0034565 Equus caballus miR-9023 14 27
mmu-miR-6951-5p MIMAT0027802 Mus musculus miR-6951-5p 14 27
aca-miR-98-3p MIMAT0021995 Anolis carolinensis miR-98-3p 14 27
mtr-miR5260 MIMAT0021260 Medicago truncatula miR5260 14 27
cel-miR-4809-3p MIMAT0019994 Caenorhabditis elegans miR-4809-3p 14 27
dps-miR-2574a-3p MIMAT0012419 Drosophila pseudoobscura miR-2574a-3p 14 27
dps-miR-2574b MIMAT0012305 Drosophila pseudoobscura miR-2574b 14 27
bta-miR-2480 MIMAT0012072 Bos taurus miR-2480 14 27
sma-let-7-3p MIMAT0032102 Schistosoma mansoni let-7-3p 14 27
dvi-miR-33-3p MIMAT0032067 Drosophila virilis miR-33-3p 14 27
mmu-miR-374b-3p MIMAT0003728 Mus musculus miR-374b-3p 14 27
dme-miR-33-3p MIMAT0020808 Drosophila melanogaster miR-33-3p 14 27
>stu-miR6026-5p MIMAT0031164 Solanum tuberosum miR6026-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gttgtatt 8
||||||||
Sbjct: 8 gttgtatt 1
>mdv1-miR-M2-5p MIMAT0003921 Mareks disease miR-M2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gttgtatt 8
||||||||
Sbjct: 1 gttgtatt 8
>eca-miR-9023 MIMAT0034565 Equus caballus miR-9023
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgtatt 8
|||||||
Sbjct: 1 ttgtatt 7
>mmu-miR-6951-5p MIMAT0027802 Mus musculus miR-6951-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgtatt 8
|||||||
Sbjct: 1 ttgtatt 7
>aca-miR-98-3p MIMAT0021995 Anolis carolinensis miR-98-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttgtat 7
|||||||
Sbjct: 8 gttgtat 2
>mtr-miR5260 MIMAT0021260 Medicago truncatula miR5260
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgtatt 8
|||||||
Sbjct: 2 ttgtatt 8
>cel-miR-4809-3p MIMAT0019994 Caenorhabditis elegans miR-4809-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgtatt 8
|||||||
Sbjct: 8 ttgtatt 2
>dps-miR-2574a-3p MIMAT0012419 Drosophila pseudoobscura
miR-2574a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgtatt 8
|||||||
Sbjct: 8 ttgtatt 2
>dps-miR-2574b MIMAT0012305 Drosophila pseudoobscura miR-2574b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgtatt 8
|||||||
Sbjct: 8 ttgtatt 2
>bta-miR-2480 MIMAT0012072 Bos taurus miR-2480
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgtatt 8
|||||||
Sbjct: 2 ttgtatt 8
>sma-let-7-3p MIMAT0032102 Schistosoma mansoni let-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttgtat 7
|||||||
Sbjct: 8 gttgtat 2
>dvi-miR-33-3p MIMAT0032067 Drosophila virilis miR-33-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgtatt 8
|||||||
Sbjct: 8 ttgtatt 2
>mmu-miR-374b-3p MIMAT0003728 Mus musculus miR-374b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttgtat 7
|||||||
Sbjct: 2 gttgtat 8
>dme-miR-33-3p MIMAT0020808 Drosophila melanogaster miR-33-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgtatt 8
|||||||
Sbjct: 8 ttgtatt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 217
Number of extensions: 201
Number of successful extensions: 159
Number of sequences better than 100.0: 14
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
