BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d9-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8653b MIMAT0034201 Gossypium raimondii miR8653b 14 20
dev-miR-D9-5p MIMAT0028180 Duck enteritis miR-D9-5p 14 20
pma-miR-4564 MIMAT0019596 Petromyzon marinus miR-4564 14 20
cte-miR-2709 MIMAT0013578 Capitella teleta miR-2709 14 20
ata-miR9783-5p MIMAT0037246 Aegilops tauschii miR9783-5p 12 80
ssc-miR-371-5p MIMAT0037081 Sus scrofa miR-371-5p 12 80
gma-miR9766 MIMAT0036403 Glycine max miR9766 12 80
gma-miR9739 MIMAT0036359 Glycine max miR9739 12 80
ocu-miR-290-5p MIMAT0036327 Oryctolagus cuniculus miR-290-5p 12 80
eca-miR-8951 MIMAT0034480 Equus caballus miR-8951 12 80
gra-miR8776d MIMAT0034222 Gossypium raimondii miR8776d 12 80
gra-miR8776c MIMAT0034221 Gossypium raimondii miR8776c 12 80
gra-miR8776b MIMAT0034220 Gossypium raimondii miR8776b 12 80
gra-miR8776a MIMAT0034219 Gossypium raimondii miR8776a 12 80
gra-miR8658 MIMAT0034026 Gossypium raimondii miR8658 12 80
gra-miR8663a MIMAT0034001 Gossypium raimondii miR8663a 12 80
pxy-miR-8490 MIMAT0033698 Plutella xylostella miR-8490 12 80
str-miR-2-5p MIMAT0033474 Strongyloides ratti miR-2-5p 12 80
str-miR-8372-5p MIMAT0033380 Strongyloides ratti miR-8372-5p 12 80
ppe-miR8127-3p MIMAT0031547 Prunus persica miR8127-3p 12 80
stu-miR8044-5p MIMAT0031223 Solanum tuberosum miR8044-5p 12 80
stu-miR7990a MIMAT0030864 Solanum tuberosum miR7990a 12 80
prd-miR-7910b-5p MIMAT0030724 Panagrellus redivivus miR-7910b-5p 12 80
prd-miR-7910a-5p MIMAT0030638 Panagrellus redivivus miR-7910a-5p 12 80
prd-miR-5360-3p MIMAT0030499 Panagrellus redivivus miR-5360-3p 12 80
ptc-miR7822 MIMAT0030381 Populus trichocarpa miR7822 12 80
bdi-miR7743-3p MIMAT0030227 Brachypodium distachyon miR7743-3p 12 80
bdi-miR7740-5p MIMAT0030216 Brachypodium distachyon miR7740-5p 12 80
bdi-miR5185m-3p MIMAT0030130 Brachypodium distachyon miR5185m-3p 12 80
ccr-miR-7133 MIMAT0026333 Cyprinus carpio miR-7133 12 80
mmu-miR-6997-3p MIMAT0027897 Mus musculus miR-6997-3p 12 80
ptc-miR6440a MIMAT0025243 Populus trichocarpa miR6440a 12 80
ptc-miR6440d MIMAT0025226 Populus trichocarpa miR6440d 12 80
ptc-miR6440c MIMAT0025200 Populus trichocarpa miR6440c 12 80
ptc-miR6440b MIMAT0025183 Populus trichocarpa miR6440b 12 80
ppe-miR6286 MIMAT0027317 Prunus persica miR6286 12 80
ame-miR-6064 MIMAT0023689 Apis mellifera miR-6064 12 80
hsa-miR-5707 MIMAT0022501 Homo sapiens miR-5707 12 80
cel-miR-5594-3p MIMAT0022310 Caenorhabditis elegans miR-5594-3p 12 80
gma-miR5374-3p MIMAT0032125 Glycine max miR5374-3p 12 80
sly-miR5303 MIMAT0020767 Solanum lycopersicum miR5303 12 80
mtr-miR5291c MIMAT0021356 Medicago truncatula miR5291c 12 80
mtr-miR5291b MIMAT0021355 Medicago truncatula miR5291b 12 80
mtr-miR5291a MIMAT0021354 Medicago truncatula miR5291a 12 80
mtr-miR5237 MIMAT0021227 Medicago truncatula miR5237 12 80
cin-miR-4002-5p MIMAT0016448 Ciona intestinalis miR-4002-5p 12 80
ppy-miR-371-5p MIMAT0015858 Pongo pygmaeus miR-371-5p 12 80
aly-miR3441-5p.1 MIMAT0017714 Arabidopsis lyrata miR3441-5p.1 12 80
aly-miR829-5p MIMAT0017611 Arabidopsis lyrata miR829-5p 12 80
bmo-miR-3421 MIMAT0015629 Bombyx mori miR-3421 12 80
aae-miR-309b-5p MIMAT0014319 Aedes aegypti miR-309b-5p 12 80
eca-miR-371-5p MIMAT0013013 Equus caballus miR-371-5p 12 80
rno-miR-293-5p MIMAT0012847 Rattus norvegicus miR-293-5p 12 80
bmo-miR-2839-5p MIMAT0013754 Bombyx mori miR-2839-5p 12 80
mtr-miR2641 MIMAT0013409 Medicago truncatula miR2641 12 80
osa-miR2122 MIMAT0011182 Oryza sativa miR2122 12 80
nve-miR-2026-5p MIMAT0009770 Nematostella vectensis miR-2026-5p 12 80
mml-miR-371-5p MIMAT0006296 Macaca mulatta miR-371-5p 12 80
rno-miR-434-3p MIMAT0005315 Rattus norvegicus miR-434-3p 12 80
ppt-miR1077-5p MIMAT0005208 Physcomitrella patens miR1077-5p 12 80
ath-miR829-5p MIMAT0032019 Arabidopsis thaliana miR829-5p 12 80
ppt-miR1217-3p MIMAT0003906 Physcomitrella patens miR1217-3p 12 80
mmu-miR-434-3p MIMAT0001422 Mus musculus miR-434-3p 12 80
rno-miR-292-5p MIMAT0000896 Rattus norvegicus miR-292-5p 12 80
rno-miR-290 MIMAT0000893 Rattus norvegicus miR-290 12 80
hsa-miR-371a-5p MIMAT0004687 Homo sapiens miR-371a-5p 12 80
mmu-miR-293-5p MIMAT0004573 Mus musculus miR-293-5p 12 80
mmu-miR-292a-5p MIMAT0000369 Mus musculus miR-292a-5p 12 80
mmu-miR-290a-5p MIMAT0000366 Mus musculus miR-290a-5p 12 80
>gra-miR8653b MIMAT0034201 Gossypium raimondii miR8653b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtttgaa 7
|||||||
Sbjct: 7 gtttgaa 1
>dev-miR-D9-5p MIMAT0028180 Duck enteritis miR-D9-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtttgaa 7
|||||||
Sbjct: 2 gtttgaa 8
>pma-miR-4564 MIMAT0019596 Petromyzon marinus miR-4564
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtttgaa 7
|||||||
Sbjct: 1 gtttgaa 7
>cte-miR-2709 MIMAT0013578 Capitella teleta miR-2709
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtttgaa 7
|||||||
Sbjct: 2 gtttgaa 8
>ata-miR9783-5p MIMAT0037246 Aegilops tauschii miR9783-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ssc-miR-371-5p MIMAT0037081 Sus scrofa miR-371-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>gma-miR9766 MIMAT0036403 Glycine max miR9766
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>gma-miR9739 MIMAT0036359 Glycine max miR9739
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ocu-miR-290-5p MIMAT0036327 Oryctolagus cuniculus miR-290-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>eca-miR-8951 MIMAT0034480 Equus caballus miR-8951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 3 tttgaa 8
>gra-miR8776d MIMAT0034222 Gossypium raimondii miR8776d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>gra-miR8776c MIMAT0034221 Gossypium raimondii miR8776c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>gra-miR8776b MIMAT0034220 Gossypium raimondii miR8776b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>gra-miR8776a MIMAT0034219 Gossypium raimondii miR8776a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>gra-miR8658 MIMAT0034026 Gossypium raimondii miR8658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>gra-miR8663a MIMAT0034001 Gossypium raimondii miR8663a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>pxy-miR-8490 MIMAT0033698 Plutella xylostella miR-8490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>str-miR-2-5p MIMAT0033474 Strongyloides ratti miR-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>str-miR-8372-5p MIMAT0033380 Strongyloides ratti miR-8372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ppe-miR8127-3p MIMAT0031547 Prunus persica miR8127-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>stu-miR8044-5p MIMAT0031223 Solanum tuberosum miR8044-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>stu-miR7990a MIMAT0030864 Solanum tuberosum miR7990a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>prd-miR-7910b-5p MIMAT0030724 Panagrellus redivivus
miR-7910b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>prd-miR-7910a-5p MIMAT0030638 Panagrellus redivivus
miR-7910a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>prd-miR-5360-3p MIMAT0030499 Panagrellus redivivus miR-5360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ptc-miR7822 MIMAT0030381 Populus trichocarpa miR7822
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>bdi-miR7743-3p MIMAT0030227 Brachypodium distachyon miR7743-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>bdi-miR7740-5p MIMAT0030216 Brachypodium distachyon miR7740-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>bdi-miR5185m-3p MIMAT0030130 Brachypodium distachyon
miR5185m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ccr-miR-7133 MIMAT0026333 Cyprinus carpio miR-7133
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>mmu-miR-6997-3p MIMAT0027897 Mus musculus miR-6997-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 6 gtttga 1
>ptc-miR6440a MIMAT0025243 Populus trichocarpa miR6440a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ptc-miR6440d MIMAT0025226 Populus trichocarpa miR6440d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ptc-miR6440c MIMAT0025200 Populus trichocarpa miR6440c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ptc-miR6440b MIMAT0025183 Populus trichocarpa miR6440b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>ppe-miR6286 MIMAT0027317 Prunus persica miR6286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ame-miR-6064 MIMAT0023689 Apis mellifera miR-6064
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>hsa-miR-5707 MIMAT0022501 Homo sapiens miR-5707
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 3 gtttga 8
>cel-miR-5594-3p MIMAT0022310 Caenorhabditis elegans miR-5594-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>gma-miR5374-3p MIMAT0032125 Glycine max miR5374-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>sly-miR5303 MIMAT0020767 Solanum lycopersicum miR5303
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 3 tttgaa 8
>mtr-miR5291c MIMAT0021356 Medicago truncatula miR5291c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 1 gtttga 6
>mtr-miR5291b MIMAT0021355 Medicago truncatula miR5291b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 1 gtttga 6
>mtr-miR5291a MIMAT0021354 Medicago truncatula miR5291a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 1 gtttga 6
>mtr-miR5237 MIMAT0021227 Medicago truncatula miR5237
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>cin-miR-4002-5p MIMAT0016448 Ciona intestinalis miR-4002-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ppy-miR-371-5p MIMAT0015858 Pongo pygmaeus miR-371-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>aly-miR3441-5p.1 MIMAT0017714 Arabidopsis lyrata miR3441-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>aly-miR829-5p MIMAT0017611 Arabidopsis lyrata miR829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 3 tttgaa 8
>bmo-miR-3421 MIMAT0015629 Bombyx mori miR-3421
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 6 gtttga 1
>aae-miR-309b-5p MIMAT0014319 Aedes aegypti miR-309b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>eca-miR-371-5p MIMAT0013013 Equus caballus miR-371-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>rno-miR-293-5p MIMAT0012847 Rattus norvegicus miR-293-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>bmo-miR-2839-5p MIMAT0013754 Bombyx mori miR-2839-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 6 gtttga 1
>mtr-miR2641 MIMAT0013409 Medicago truncatula miR2641
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gtttga 6
||||||
Sbjct: 1 gtttga 6
>osa-miR2122 MIMAT0011182 Oryza sativa miR2122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>nve-miR-2026-5p MIMAT0009770 Nematostella vectensis miR-2026-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 7 tttgaa 2
>mml-miR-371-5p MIMAT0006296 Macaca mulatta miR-371-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>rno-miR-434-3p MIMAT0005315 Rattus norvegicus miR-434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>ppt-miR1077-5p MIMAT0005208 Physcomitrella patens miR1077-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgaa 7
||||||
Sbjct: 6 tttgaa 1
>ath-miR829-5p MIMAT0032019 Arabidopsis thaliana miR829-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 3 tttgaa 8
>ppt-miR1217-3p MIMAT0003906 Physcomitrella patens miR1217-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 3 tttgaa 8
>mmu-miR-434-3p MIMAT0001422 Mus musculus miR-434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgaa 7
||||||
Sbjct: 1 tttgaa 6
>rno-miR-292-5p MIMAT0000896 Rattus norvegicus miR-292-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>rno-miR-290 MIMAT0000893 Rattus norvegicus miR-290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>hsa-miR-371a-5p MIMAT0004687 Homo sapiens miR-371a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>mmu-miR-293-5p MIMAT0004573 Mus musculus miR-293-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>mmu-miR-292a-5p MIMAT0000369 Mus musculus miR-292a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
>mmu-miR-290a-5p MIMAT0000366 Mus musculus miR-290a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gtttga 6
||||||
Sbjct: 8 gtttga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 85
Number of extensions: 81
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
