BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-16
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7897-5p MIMAT0030586 Panagrellus redivivus miR-7897-5p 14 27
bta-miR-2285aa MIMAT0030435 Bos taurus miR-2285aa 14 27
mmu-miR-7664-5p MIMAT0029834 Mus musculus miR-7664-5p 14 27
mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica miR-7262b-3p 14 27
mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p 14 27
ola-miR-145 MIMAT0022669 Oryzias latipes miR-145 14 27
sko-miR-4823-3p MIMAT0020028 Saccoglossus kowalevskii miR-4823-3p 14 27
hsa-miR-4328 MIMAT0016926 Homo sapiens miR-4328 14 27
bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396 14 27
dme-miR-2498-3p MIMAT0012211 Drosophila melanogaster miR-2498-3p 14 27
gga-miR-1631 MIMAT0007502 Gallus gallus miR-1631 14 27
>prd-miR-7897-5p MIMAT0030586 Panagrellus redivivus miR-7897-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaactgg 8
|||||||
Sbjct: 8 aaactgg 2
>bta-miR-2285aa MIMAT0030435 Bos taurus miR-2285aa
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaactgg 8
|||||||
Sbjct: 2 aaactgg 8
>mmu-miR-7664-5p MIMAT0029834 Mus musculus miR-7664-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaactg 7
|||||||
Sbjct: 7 taaactg 1
>mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica
miR-7262b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaactgg 8
|||||||
Sbjct: 1 aaactgg 7
>mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaactgg 8
|||||||
Sbjct: 1 aaactgg 7
>ola-miR-145 MIMAT0022669 Oryzias latipes miR-145
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaactgg 8
|||||||
Sbjct: 8 aaactgg 2
>sko-miR-4823-3p MIMAT0020028 Saccoglossus kowalevskii
miR-4823-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaactgg 8
|||||||
Sbjct: 8 aaactgg 2
>hsa-miR-4328 MIMAT0016926 Homo sapiens miR-4328
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaactgg 8
|||||||
Sbjct: 7 aaactgg 1
>bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaactgg 8
|||||||
Sbjct: 8 aaactgg 2
>dme-miR-2498-3p MIMAT0012211 Drosophila melanogaster
miR-2498-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaactgg 8
|||||||
Sbjct: 1 aaactgg 7
>gga-miR-1631 MIMAT0007502 Gallus gallus miR-1631
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaactgg 8
|||||||
Sbjct: 1 aaactgg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 180
Number of extensions: 169
Number of successful extensions: 151
Number of sequences better than 100.0: 11
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
