BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ptc-miR6465 MIMAT0025193 Populus trichocarpa miR6465 14 20
mtr-miR5760 MIMAT0023149 Medicago truncatula miR5760 14 20
tca-miR-3881-3p MIMAT0018859 Tribolium castaneum miR-3881-3p 14 20
bmo-miR-3374-3p MIMAT0015564 Bombyx mori miR-3374-3p 14 20
dps-miR-2513a MIMAT0012298 Drosophila pseudoobscura miR-2513a 14 20
tch-miR-330-3p MIMAT0036574 Tupaia chinensis miR-330-3p 12 80
sly-miR167b-5p MIMAT0035457 Solanum lycopersicum miR167b-5p 12 80
nve-miR-9424b MIMAT0035392 Nematostella vectensis miR-9424b 12 80
dme-miR-9372-5p MIMAT0035207 Drosophila melanogaster miR-9372-5p 12 80
efu-miR-330 MIMAT0034927 Eptesicus fuscus miR-330 12 80
eca-miR-9072 MIMAT0034617 Equus caballus miR-9072 12 80
atr-miR390.1 MIMAT0033933 Amborella trichopoda miR390.1 12 80
pxy-miR-9a MIMAT0033776 Plutella xylostella miR-9a 12 80
sma-miR-8439-5p MIMAT0033582 Schistosoma mansoni miR-8439-5p 12 80
ppc-miR-8364w-3p MIMAT0033162 Pristionchus pacificus miR-8364w-3p 12 80
ppc-miR-8364v-3p MIMAT0033108 Pristionchus pacificus miR-8364v-3p 12 80
ppc-miR-8256-3p MIMAT0032981 Pristionchus pacificus miR-8256-3p 12 80
ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p 12 80
cel-miR-8197-5p MIMAT0032807 Caenorhabditis elegans miR-8197-5p 12 80
ssa-miR-9b-3p MIMAT0032731 Salmo salar miR-9b-3p 12 80
ssa-miR-9a-8-3p MIMAT0032729 Salmo salar miR-9a-8-3p 12 80
ssa-miR-9a-7-3p MIMAT0032728 Salmo salar miR-9a-7-3p 12 80
ssa-miR-9a-6-3p MIMAT0032727 Salmo salar miR-9a-6-3p 12 80
ssa-miR-9a-3-3p MIMAT0032724 Salmo salar miR-9a-3-3p 12 80
ssa-miR-9a-2-3p MIMAT0032723 Salmo salar miR-9a-2-3p 12 80
ssa-miR-9a-1-3p MIMAT0032722 Salmo salar miR-9a-1-3p 12 80
bbe-miR-9-3p MIMAT0031727 Branchiostoma belcheri miR-9-3p 12 80
bbe-miR-2063-3p MIMAT0031625 Branchiostoma belcheri miR-2063-3p 12 80
prd-miR-67-5p MIMAT0030754 Panagrellus redivivus miR-67-5p 12 80
mdo-miR-9b-3p MIMAT0028555 Monodelphis domestica miR-9b-3p 12 80
ccr-miR-9-5p MIMAT0026322 Cyprinus carpio miR-9-5p 12 80
mmu-miR-7026-3p MIMAT0027957 Mus musculus miR-7026-3p 12 80
gga-miR-6550-5p MIMAT0025605 Gallus gallus miR-6550-5p 12 80
pol-miR-9b-3p MIMAT0025421 Paralichthys olivaceus miR-9b-3p 12 80
hme-miR-79 MIMAT0024987 Heliconius melpomene miR-79 12 80
mmu-miR-6240 MIMAT0024861 Mus musculus miR-6240 12 80
ggo-miR-330 MIMAT0024088 Gorilla gorilla miR-330 12 80
hco-miR-5959 MIMAT0023463 Haemonchus contortus miR-5959 12 80
aca-miR-9-3-3p MIMAT0021992 Anolis carolinensis miR-9-3-3p 12 80
cel-miR-4936 MIMAT0020142 Caenorhabditis elegans miR-4936 12 80
pma-miR-9a-3p MIMAT0019374 Petromyzon marinus miR-9a-3p 12 80
pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d 12 80
ame-miR-9c MIMAT0018572 Apis mellifera miR-9c 12 80
ame-miR-3750 MIMAT0018519 Apis mellifera miR-3750 12 80
ppy-miR-330-3p MIMAT0015834 Pongo pygmaeus miR-330-3p 12 80
api-miR-3031 MIMAT0014767 Acyrthosiphon pisum miR-3031 12 80
tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971 12 80
cqu-miR-9-3p MIMAT0014381 Culex quinquefasciatus miR-9-3p 12 80
aae-miR-79-3p MIMAT0014295 Aedes aegypti miR-79-3p 12 80
aae-miR-9c-3p MIMAT0014213 Aedes aegypti miR-9c-3p 12 80
cte-miR-2703-3p MIMAT0013568 Capitella teleta miR-2703-3p 12 80
cte-miR-2694 MIMAT0013553 Capitella teleta miR-2694 12 80
dps-miR-2551-3p MIMAT0012363 Drosophila pseudoobscura miR-2551-3p 12 80
dps-miR-2522a MIMAT0012310 Drosophila pseudoobscura miR-2522a 12 80
cte-miR-9-3p MIMAT0009554 Capitella teleta miR-9-3p 12 80
bta-miR-562 MIMAT0009349 Bos taurus miR-562 12 80
bta-miR-330 MIMAT0009290 Bos taurus miR-330 12 80
dya-miR-79 MIMAT0009124 Drosophila yakuba miR-79 12 80
dwi-miR-79 MIMAT0008981 Drosophila willistoni miR-79 12 80
dvi-miR-79-3p MIMAT0008975 Drosophila virilis miR-79-3p 12 80
dvi-miR-9a-3p MIMAT0032057 Drosophila virilis miR-9a-3p 12 80
dvi-miR-9c-3p MIMAT0032054 Drosophila virilis miR-9c-3p 12 80
dse-miR-79 MIMAT0008769 Drosophila sechellia miR-79 12 80
dpe-miR-79 MIMAT0008747 Drosophila persimilis miR-79 12 80
dmo-miR-79 MIMAT0008690 Drosophila mojavensis miR-79 12 80
dgr-miR-79 MIMAT0008583 Drosophila grimshawi miR-79 12 80
der-miR-79 MIMAT0008525 Drosophila erecta miR-79 12 80
dan-miR-79 MIMAT0008430 Drosophila ananassae miR-79 12 80
ptr-miR-330 MIMAT0008102 Pan troglodytes miR-330 12 80
mml-miR-330-3p MIMAT0006271 Macaca mulatta miR-330-3p 12 80
gga-miR-1651-3p MIMAT0007530 Gallus gallus miR-1651-3p 12 80
gma-miR1512a-3p MIMAT0032030 Glycine max miR1512a-3p 12 80
oan-miR-9-3p MIMAT0006793 Ornithorhynchus anatinus miR-9-3p 12 80
hsa-miR-548e-5p MIMAT0026736 Homo sapiens miR-548e-5p 12 80
ame-miR-79 MIMAT0004433 Apis mellifera miR-79 12 80
sme-miR-124a-5p MIMAT0012112 Schmidtea mediterranea miR-124a-5p 12 80
xtr-miR-9-3p MIMAT0003650 Xenopus tropicalis miR-9-3p 12 80
xtr-miR-9b-3p MIMAT0003556 Xenopus tropicalis miR-9b-3p 12 80
xtr-miR-9a-3p MIMAT0003554 Xenopus tropicalis miR-9a-3p 12 80
mmu-miR-302c-5p MIMAT0003375 Mus musculus miR-302c-5p 12 80
gga-miR-9-3p MIMAT0003350 Gallus gallus miR-9-3p 12 80
dre-miR-9-7-3p MIMAT0031933 Danio rerio miR-9-7-3p 12 80
dre-miR-9-4-3p MIMAT0031932 Danio rerio miR-9-4-3p 12 80
dre-miR-9-3p MIMAT0003156 Danio rerio miR-9-3p 12 80
aga-miR-79 MIMAT0001524 Anopheles gambiae miR-79 12 80
dps-miR-79 MIMAT0001224 Drosophila pseudoobscura miR-79 12 80
hsa-miR-330-3p MIMAT0000751 Homo sapiens miR-330-3p 12 80
mmu-miR-330-3p MIMAT0000569 Mus musculus miR-330-3p 12 80
rno-miR-330-3p MIMAT0000568 Rattus norvegicus miR-330-3p 12 80
dme-miR-9c-3p MIMAT0020828 Drosophila melanogaster miR-9c-3p 12 80
dme-miR-79-3p MIMAT0000352 Drosophila melanogaster miR-79-3p 12 80
dme-miR-9a-3p MIMAT0020792 Drosophila melanogaster miR-9a-3p 12 80
>ptc-miR6465 MIMAT0025193 Populus trichocarpa miR6465
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaagca 7
|||||||
Sbjct: 2 taaagca 8
>mtr-miR5760 MIMAT0023149 Medicago truncatula miR5760
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaagca 7
|||||||
Sbjct: 7 taaagca 1
>tca-miR-3881-3p MIMAT0018859 Tribolium castaneum miR-3881-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaagca 7
|||||||
Sbjct: 7 taaagca 1
>bmo-miR-3374-3p MIMAT0015564 Bombyx mori miR-3374-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaagca 7
|||||||
Sbjct: 7 taaagca 1
>dps-miR-2513a MIMAT0012298 Drosophila pseudoobscura miR-2513a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaagca 7
|||||||
Sbjct: 1 taaagca 7
>tch-miR-330-3p MIMAT0036574 Tupaia chinensis miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>sly-miR167b-5p MIMAT0035457 Solanum lycopersicum miR167b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>nve-miR-9424b MIMAT0035392 Nematostella vectensis miR-9424b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dme-miR-9372-5p MIMAT0035207 Drosophila melanogaster
miR-9372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>efu-miR-330 MIMAT0034927 Eptesicus fuscus miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>eca-miR-9072 MIMAT0034617 Equus caballus miR-9072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>atr-miR390.1 MIMAT0033933 Amborella trichopoda miR390.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>pxy-miR-9a MIMAT0033776 Plutella xylostella miR-9a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>sma-miR-8439-5p MIMAT0033582 Schistosoma mansoni miR-8439-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taaagc 6
||||||
Sbjct: 8 taaagc 3
>ppc-miR-8364w-3p MIMAT0033162 Pristionchus pacificus
miR-8364w-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 1 aaagca 6
>ppc-miR-8364v-3p MIMAT0033108 Pristionchus pacificus
miR-8364v-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 1 aaagca 6
>ppc-miR-8256-3p MIMAT0032981 Pristionchus pacificus miR-8256-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>ppc-miR-228-3p MIMAT0032847 Pristionchus pacificus miR-228-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 8 aaagca 3
>cel-miR-8197-5p MIMAT0032807 Caenorhabditis elegans miR-8197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 8 aaagca 3
>ssa-miR-9b-3p MIMAT0032731 Salmo salar miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-8-3p MIMAT0032729 Salmo salar miR-9a-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-7-3p MIMAT0032728 Salmo salar miR-9a-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-6-3p MIMAT0032727 Salmo salar miR-9a-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-3-3p MIMAT0032724 Salmo salar miR-9a-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-2-3p MIMAT0032723 Salmo salar miR-9a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ssa-miR-9a-1-3p MIMAT0032722 Salmo salar miR-9a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>bbe-miR-9-3p MIMAT0031727 Branchiostoma belcheri miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>bbe-miR-2063-3p MIMAT0031625 Branchiostoma belcheri miR-2063-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>prd-miR-67-5p MIMAT0030754 Panagrellus redivivus miR-67-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>mdo-miR-9b-3p MIMAT0028555 Monodelphis domestica miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ccr-miR-9-5p MIMAT0026322 Cyprinus carpio miR-9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>mmu-miR-7026-3p MIMAT0027957 Mus musculus miR-7026-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 8 aaagca 3
>gga-miR-6550-5p MIMAT0025605 Gallus gallus miR-6550-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 1 aaagca 6
>pol-miR-9b-3p MIMAT0025421 Paralichthys olivaceus miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>hme-miR-79 MIMAT0024987 Heliconius melpomene miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>mmu-miR-6240 MIMAT0024861 Mus musculus miR-6240
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>ggo-miR-330 MIMAT0024088 Gorilla gorilla miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>hco-miR-5959 MIMAT0023463 Haemonchus contortus miR-5959
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>aca-miR-9-3-3p MIMAT0021992 Anolis carolinensis miR-9-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>cel-miR-4936 MIMAT0020142 Caenorhabditis elegans miR-4936
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>pma-miR-9a-3p MIMAT0019374 Petromyzon marinus miR-9a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taaagc 6
||||||
Sbjct: 8 taaagc 3
>ame-miR-9c MIMAT0018572 Apis mellifera miR-9c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ame-miR-3750 MIMAT0018519 Apis mellifera miR-3750
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ppy-miR-330-3p MIMAT0015834 Pongo pygmaeus miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>api-miR-3031 MIMAT0014767 Acyrthosiphon pisum miR-3031
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 7 aaagca 2
>tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>cqu-miR-9-3p MIMAT0014381 Culex quinquefasciatus miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>aae-miR-79-3p MIMAT0014295 Aedes aegypti miR-79-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>aae-miR-9c-3p MIMAT0014213 Aedes aegypti miR-9c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>cte-miR-2703-3p MIMAT0013568 Capitella teleta miR-2703-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>cte-miR-2694 MIMAT0013553 Capitella teleta miR-2694
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>dps-miR-2551-3p MIMAT0012363 Drosophila pseudoobscura
miR-2551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dps-miR-2522a MIMAT0012310 Drosophila pseudoobscura miR-2522a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 1 aaagca 6
>cte-miR-9-3p MIMAT0009554 Capitella teleta miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>bta-miR-562 MIMAT0009349 Bos taurus miR-562
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 1 aaagca 6
>bta-miR-330 MIMAT0009290 Bos taurus miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>dya-miR-79 MIMAT0009124 Drosophila yakuba miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dwi-miR-79 MIMAT0008981 Drosophila willistoni miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dvi-miR-79-3p MIMAT0008975 Drosophila virilis miR-79-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dvi-miR-9a-3p MIMAT0032057 Drosophila virilis miR-9a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dvi-miR-9c-3p MIMAT0032054 Drosophila virilis miR-9c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dse-miR-79 MIMAT0008769 Drosophila sechellia miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dpe-miR-79 MIMAT0008747 Drosophila persimilis miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dmo-miR-79 MIMAT0008690 Drosophila mojavensis miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dgr-miR-79 MIMAT0008583 Drosophila grimshawi miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>der-miR-79 MIMAT0008525 Drosophila erecta miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dan-miR-79 MIMAT0008430 Drosophila ananassae miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>ptr-miR-330 MIMAT0008102 Pan troglodytes miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>mml-miR-330-3p MIMAT0006271 Macaca mulatta miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>gga-miR-1651-3p MIMAT0007530 Gallus gallus miR-1651-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 7 aaagca 2
>gma-miR1512a-3p MIMAT0032030 Glycine max miR1512a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taaagc 6
||||||
Sbjct: 6 taaagc 1
>oan-miR-9-3p MIMAT0006793 Ornithorhynchus anatinus miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>hsa-miR-548e-5p MIMAT0026736 Homo sapiens miR-548e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>ame-miR-79 MIMAT0004433 Apis mellifera miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>sme-miR-124a-5p MIMAT0012112 Schmidtea mediterranea miR-124a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaagca 7
||||||
Sbjct: 6 aaagca 1
>xtr-miR-9-3p MIMAT0003650 Xenopus tropicalis miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>xtr-miR-9b-3p MIMAT0003556 Xenopus tropicalis miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>xtr-miR-9a-3p MIMAT0003554 Xenopus tropicalis miR-9a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>mmu-miR-302c-5p MIMAT0003375 Mus musculus miR-302c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taaagc 6
||||||
Sbjct: 6 taaagc 1
>gga-miR-9-3p MIMAT0003350 Gallus gallus miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dre-miR-9-7-3p MIMAT0031933 Danio rerio miR-9-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dre-miR-9-4-3p MIMAT0031932 Danio rerio miR-9-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dre-miR-9-3p MIMAT0003156 Danio rerio miR-9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>aga-miR-79 MIMAT0001524 Anopheles gambiae miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dps-miR-79 MIMAT0001224 Drosophila pseudoobscura miR-79
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>hsa-miR-330-3p MIMAT0000751 Homo sapiens miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>mmu-miR-330-3p MIMAT0000569 Mus musculus miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>rno-miR-330-3p MIMAT0000568 Rattus norvegicus miR-330-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaagca 7
||||||
Sbjct: 3 aaagca 8
>dme-miR-9c-3p MIMAT0020828 Drosophila melanogaster miR-9c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dme-miR-79-3p MIMAT0000352 Drosophila melanogaster miR-79-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
>dme-miR-9a-3p MIMAT0020792 Drosophila melanogaster miR-9a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taaagc 6
||||||
Sbjct: 1 taaagc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 170
Number of successful extensions: 92
Number of sequences better than 100.0: 92
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 92
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
