BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9072 MIMAT0034617 Equus caballus miR-9072 16 6.9
tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971 16 6.9
eca-miR-8942 MIMAT0034471 Equus caballus miR-8942 14 27
ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p 14 27
ath-miR5643b MIMAT0022445 Arabidopsis thaliana miR5643b 14 27
ath-miR5643a MIMAT0022404 Arabidopsis thaliana miR5643a 14 27
pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d 14 27
aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228 14 27
mmu-miR-3078-5p MIMAT0014864 Mus musculus miR-3078-5p 14 27
sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p 14 27
>eca-miR-9072 MIMAT0034617 Equus caballus miR-9072
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaagcct 8
||||||||
Sbjct: 1 taaagcct 8
>tgu-miR-2971 MIMAT0014481 Taeniopygia guttata miR-2971
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaagcct 8
||||||||
Sbjct: 1 taaagcct 8
>eca-miR-8942 MIMAT0034471 Equus caballus miR-8942
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcct 8
|||||||
Sbjct: 8 aaagcct 2
>ssa-miR-736-5p MIMAT0032684 Salmo salar miR-736-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcct 8
|||||||
Sbjct: 7 aaagcct 1
>ath-miR5643b MIMAT0022445 Arabidopsis thaliana miR5643b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcct 8
|||||||
Sbjct: 7 aaagcct 1
>ath-miR5643a MIMAT0022404 Arabidopsis thaliana miR5643a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcct 8
|||||||
Sbjct: 7 aaagcct 1
>pma-miR-1d MIMAT0019369 Petromyzon marinus miR-1d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaagcc 7
|||||||
Sbjct: 8 taaagcc 2
>aly-miR4228 MIMAT0017916 Arabidopsis lyrata miR4228
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaagcct 8
|||||||
Sbjct: 1 aaagcct 7
>mmu-miR-3078-5p MIMAT0014864 Mus musculus miR-3078-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaagcct 8
|||||||
Sbjct: 2 aaagcct 8
>sme-bantam-c-5p MIMAT0012086 Schmidtea mediterranea bantam-c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagcct 8
|||||||
Sbjct: 8 aaagcct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 191
Number of extensions: 179
Number of successful extensions: 96
Number of sequences better than 100.0: 10
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
