BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-20-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-20-5p MIMAT0014065 Rhesus lymphocryptovirus miR-rL1... 16 6.9
sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p 14 27
ssa-miR-724-5p MIMAT0032671 Salmo salar miR-724-5p 14 27
ipu-miR-724 MIMAT0029522 Ictalurus punctatus miR-724 14 27
ccr-miR-724 MIMAT0026311 Cyprinus carpio miR-724 14 27
hsa-miR-6832-3p MIMAT0027565 Homo sapiens miR-6832-3p 14 27
mmu-miR-5618-5p MIMAT0022363 Mus musculus miR-5618-5p 14 27
cel-miR-5546-5p MIMAT0022183 Caenorhabditis elegans miR-5546-5p 14 27
ppy-miR-553 MIMAT0015999 Pongo pygmaeus miR-553 14 27
dre-miR-724 MIMAT0003752 Danio rerio miR-724 14 27
>rlcv-miR-rL1-20-5p MIMAT0014065 Rhesus lymphocryptovirus
miR-rL1-20-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaagggt 8
||||||||
Sbjct: 1 taaagggt 8
>sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaagggt 8
|||||||
Sbjct: 1 aaagggt 7
>ssa-miR-724-5p MIMAT0032671 Salmo salar miR-724-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaaggg 7
|||||||
Sbjct: 2 taaaggg 8
>ipu-miR-724 MIMAT0029522 Ictalurus punctatus miR-724
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaaggg 7
|||||||
Sbjct: 2 taaaggg 8
>ccr-miR-724 MIMAT0026311 Cyprinus carpio miR-724
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaaggg 7
|||||||
Sbjct: 2 taaaggg 8
>hsa-miR-6832-3p MIMAT0027565 Homo sapiens miR-6832-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagggt 8
|||||||
Sbjct: 7 aaagggt 1
>mmu-miR-5618-5p MIMAT0022363 Mus musculus miR-5618-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagggt 8
|||||||
Sbjct: 8 aaagggt 2
>cel-miR-5546-5p MIMAT0022183 Caenorhabditis elegans miR-5546-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaagggt 8
|||||||
Sbjct: 7 aaagggt 1
>ppy-miR-553 MIMAT0015999 Pongo pygmaeus miR-553
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaagggt 8
|||||||
Sbjct: 2 aaagggt 8
>dre-miR-724 MIMAT0003752 Danio rerio miR-724
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaaggg 7
|||||||
Sbjct: 2 taaaggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 135
Number of extensions: 124
Number of successful extensions: 96
Number of sequences better than 100.0: 10
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
