BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h16-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p 16 6.9
nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p 16 6.9
oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p 14 27
ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p 14 27
ppy-miR-3121 MIMAT0024396 Pongo pygmaeus miR-3121 14 27
ptr-miR-3121 MIMAT0024061 Pan troglodytes miR-3121 14 27
ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628 14 27
aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p 14 27
hsa-miR-3121-3p MIMAT0014983 Homo sapiens miR-3121-3p 14 27
tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p 14 27
oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p 14 27
dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p 14 27
rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p 14 27
hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p 14 27
cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p 14 27
mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p 14 27
>hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaatagc 8
||||||||
Sbjct: 1 taaatagc 8
>nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaatagc 8
||||||||
Sbjct: 1 taaatagc 8
>oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>ppy-miR-3121 MIMAT0024396 Pongo pygmaeus miR-3121
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatag 7
|||||||
Sbjct: 1 taaatag 7
>ptr-miR-3121 MIMAT0024061 Pan troglodytes miR-3121
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatag 7
|||||||
Sbjct: 1 taaatag 7
>ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaatagc 8
|||||||
Sbjct: 2 aaatagc 8
>aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>hsa-miR-3121-3p MIMAT0014983 Homo sapiens miR-3121-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatag 7
|||||||
Sbjct: 1 taaatag 7
>tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
>mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatagc 8
|||||||
Sbjct: 7 aaatagc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 123
Number of extensions: 105
Number of successful extensions: 91
Number of sequences better than 100.0: 16
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)