BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hvt-miR-h16-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p                  16   6.9  
nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p        16   6.9  
oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p          14      27
ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p                     14      27
ppy-miR-3121 MIMAT0024396 Pongo pygmaeus miR-3121                      14      27
ptr-miR-3121 MIMAT0024061 Pan troglodytes miR-3121                     14      27
ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628                  14      27
aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p         14      27
hsa-miR-3121-3p MIMAT0014983 Homo sapiens miR-3121-3p                  14      27
tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p         14      27
oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p        14      27
dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p                     14      27
rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p           14      27
hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p                14      27
cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p          14      27
mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p                14      27
>hvt-miR-H16-3p MIMAT0012871 Herpesvirus of miR-H16-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 taaatagc 8
         ||||||||
Sbjct: 1 taaatagc 8
>nve-miR-2046-3p MIMAT0009817 Nematostella vectensis miR-2046-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 taaatagc 8
         ||||||||
Sbjct: 1 taaatagc 8
>oha-miR-138-2-3p MIMAT0036712 Ophiophagus hannah miR-138-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>ssa-miR-138-3p MIMAT0032353 Salmo salar miR-138-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>ppy-miR-3121 MIMAT0024396 Pongo pygmaeus miR-3121
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taaatag 7
         |||||||
Sbjct: 1 taaatag 7
>ptr-miR-3121 MIMAT0024061 Pan troglodytes miR-3121
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taaatag 7
         |||||||
Sbjct: 1 taaatag 7
>ath-miR5628 MIMAT0022387 Arabidopsis thaliana miR5628
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 2 aaatagc 8
>aca-miR-138-1-3p MIMAT0021758 Anolis carolinensis miR-138-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>hsa-miR-3121-3p MIMAT0014983 Homo sapiens miR-3121-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taaatag 7
         |||||||
Sbjct: 1 taaatag 7
>tgu-miR-138-2-3p MIMAT0031021 Taeniopygia guttata miR-138-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>oan-miR-138-3p MIMAT0007220 Ornithorhynchus anatinus miR-138-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>dre-miR-138-3p MIMAT0031973 Danio rerio miR-138-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>rno-miR-138-2-3p MIMAT0017127 Rattus norvegicus miR-138-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>hsa-miR-138-2-3p MIMAT0004596 Homo sapiens miR-138-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>cel-miR-245-5p MIMAT0020336 Caenorhabditis elegans miR-245-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
>mmu-miR-138-2-3p MIMAT0016987 Mus musculus miR-138-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aaatagc 8
         |||||||
Sbjct: 7 aaatagc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 123
Number of extensions: 105
Number of successful extensions: 91
Number of sequences better than 100.0: 16
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)