BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-32-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-32-3p MIMAT0016958 Rhesus lymphocryptovirus miR-rL1... 16 6.9
tch-miR-9771i MIMAT0036555 Tupaia chinensis miR-9771i 14 27
gsa-miR-277b-3p MIMAT0035311 Gyrodactylus salaris miR-277b-3p 14 27
gsa-miR-277a-3p MIMAT0035297 Gyrodactylus salaris miR-277a-3p 14 27
gra-miR8771e MIMAT0034145 Gossypium raimondii miR8771e 14 27
pxy-miR-277 MIMAT0033785 Plutella xylostella miR-277 14 27
str-miR-8390-3p MIMAT0033449 Strongyloides ratti miR-8390-3p 14 27
ssa-miR-734-3p MIMAT0032739 Salmo salar miR-734-3p 14 27
bma-miR-232 MIMAT0031741 Brugia malayi miR-232 14 27
prd-miR-277-3p MIMAT0030811 Panagrellus redivivus miR-277-3p 14 27
cbn-miR-232 MIMAT0029755 Caenorhabditis brenneri miR-232 14 27
ccr-miR-734 MIMAT0026318 Cyprinus carpio miR-734 14 27
hme-miR-277 MIMAT0024959 Heliconius melpomene miR-277 14 27
ppe-miR6266c MIMAT0027334 Prunus persica miR6266c 14 27
ppe-miR6266b MIMAT0027324 Prunus persica miR6266b 14 27
ppe-miR6266a MIMAT0027290 Prunus persica miR6266a 14 27
mse-miR-277 MIMAT0024443 Manduca sexta miR-277 14 27
asu-miR-5366-5p MIMAT0021594 Ascaris suum miR-5366-5p 14 27
emu-miR-277 MIMAT0020272 Echinococcus multilocularis miR-277 14 27
egr-miR-277 MIMAT0020247 Echinococcus granulosus miR-277 14 27
cel-miR-4807 MIMAT0019990 Caenorhabditis elegans miR-4807 14 27
nlo-miR-277 MIMAT0018431 Nasonia longicornis miR-277 14 27
ngi-miR-277 MIMAT0018400 Nasonia giraulti miR-277 14 27
vvi-miR3629a-5p MIMAT0018021 Vitis vinifera miR3629a-5p 14 27
sja-miR-277 MIMAT0016269 Schistosoma japonicum miR-277 14 27
nvi-miR-277 MIMAT0015683 Nasonia vitripennis miR-277 14 27
api-miR-277 MIMAT0014722 Acyrthosiphon pisum miR-277 14 27
cqu-miR-277 MIMAT0014371 Culex quinquefasciatus miR-277 14 27
aae-miR-277-3p MIMAT0014211 Aedes aegypti miR-277-3p 14 27
cte-miR-277b MIMAT0013575 Capitella teleta miR-277b 14 27
cte-miR-277a MIMAT0013531 Capitella teleta miR-277a 14 27
ppc-miR-232 MIMAT0011699 Pristionchus pacificus miR-232 14 27
crm-miR-357 MIMAT0011604 Caenorhabditis remanei miR-357 14 27
crm-miR-232 MIMAT0011516 Caenorhabditis remanei miR-232 14 27
dya-miR-277 MIMAT0009099 Drosophila yakuba miR-277 14 27
dwi-miR-277 MIMAT0009040 Drosophila willistoni miR-277 14 27
dvi-miR-277-3p MIMAT0008946 Drosophila virilis miR-277-3p 14 27
dsi-miR-277 MIMAT0008850 Drosophila simulans miR-277 14 27
dse-miR-277 MIMAT0008794 Drosophila sechellia miR-277 14 27
dpe-miR-277 MIMAT0008702 Drosophila persimilis miR-277 14 27
dmo-miR-277 MIMAT0008685 Drosophila mojavensis miR-277 14 27
dgr-miR-277 MIMAT0008556 Drosophila grimshawi miR-277 14 27
der-miR-277 MIMAT0008517 Drosophila erecta miR-277 14 27
dan-miR-277 MIMAT0008407 Drosophila ananassae miR-277 14 27
tca-miR-277-3p MIMAT0008382 Tribolium castaneum miR-277-3p 14 27
sme-miR-277d-3p MIMAT0004024 Schmidtea mediterranea miR-277d-3p 14 27
sme-miR-277c-3p MIMAT0004010 Schmidtea mediterranea miR-277c-3p 14 27
sme-miR-277a-3p MIMAT0004007 Schmidtea mediterranea miR-277a-3p 14 27
sme-miR-124b-5p MIMAT0012113 Schmidtea mediterranea miR-124b-5p 14 27
bmo-miR-277-3p MIMAT0004203 Bombyx mori miR-277-3p 14 27
dre-miR-734 MIMAT0003765 Danio rerio miR-734 14 27
ebv-miR-BART14-3p MIMAT0003426 Epstein Barr miR-BART14-3p 14 27
aga-miR-277 MIMAT0001510 Anopheles gambiae miR-277 14 27
ame-miR-277 MIMAT0001481 Apis mellifera miR-277 14 27
dps-miR-277 MIMAT0001241 Drosophila pseudoobscura miR-277 14 27
cel-lsy-6-5p MIMAT0031896 Caenorhabditis elegans lsy-6-5p 14 27
cbr-miR-232 MIMAT0000497 Caenorhabditis briggsae miR-232 14 27
dme-miR-277-3p MIMAT0000338 Drosophila melanogaster miR-277-3p 14 27
cel-miR-232-3p MIMAT0000287 Caenorhabditis elegans miR-232-3p 14 27
>rlcv-miR-rL1-32-3p MIMAT0016958 Rhesus lymphocryptovirus
miR-rL1-32-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taaatgcg 8
||||||||
Sbjct: 1 taaatgcg 8
>tch-miR-9771i MIMAT0036555 Tupaia chinensis miR-9771i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaatgcg 8
|||||||
Sbjct: 1 aaatgcg 7
>gsa-miR-277b-3p MIMAT0035311 Gyrodactylus salaris miR-277b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>gsa-miR-277a-3p MIMAT0035297 Gyrodactylus salaris miR-277a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>gra-miR8771e MIMAT0034145 Gossypium raimondii miR8771e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaatgc 7
|||||||
Sbjct: 8 taaatgc 2
>pxy-miR-277 MIMAT0033785 Plutella xylostella miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>str-miR-8390-3p MIMAT0033449 Strongyloides ratti miR-8390-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ssa-miR-734-3p MIMAT0032739 Salmo salar miR-734-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>bma-miR-232 MIMAT0031741 Brugia malayi miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>prd-miR-277-3p MIMAT0030811 Panagrellus redivivus miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cbn-miR-232 MIMAT0029755 Caenorhabditis brenneri miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ccr-miR-734 MIMAT0026318 Cyprinus carpio miR-734
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>hme-miR-277 MIMAT0024959 Heliconius melpomene miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ppe-miR6266c MIMAT0027334 Prunus persica miR6266c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ppe-miR6266b MIMAT0027324 Prunus persica miR6266b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ppe-miR6266a MIMAT0027290 Prunus persica miR6266a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>mse-miR-277 MIMAT0024443 Manduca sexta miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>asu-miR-5366-5p MIMAT0021594 Ascaris suum miR-5366-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>emu-miR-277 MIMAT0020272 Echinococcus multilocularis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>egr-miR-277 MIMAT0020247 Echinococcus granulosus miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cel-miR-4807 MIMAT0019990 Caenorhabditis elegans miR-4807
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaatgcg 8
|||||||
Sbjct: 1 aaatgcg 7
>nlo-miR-277 MIMAT0018431 Nasonia longicornis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ngi-miR-277 MIMAT0018400 Nasonia giraulti miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>vvi-miR3629a-5p MIMAT0018021 Vitis vinifera miR3629a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaatgcg 8
|||||||
Sbjct: 7 aaatgcg 1
>sja-miR-277 MIMAT0016269 Schistosoma japonicum miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>nvi-miR-277 MIMAT0015683 Nasonia vitripennis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>api-miR-277 MIMAT0014722 Acyrthosiphon pisum miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cqu-miR-277 MIMAT0014371 Culex quinquefasciatus miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>aae-miR-277-3p MIMAT0014211 Aedes aegypti miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cte-miR-277b MIMAT0013575 Capitella teleta miR-277b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cte-miR-277a MIMAT0013531 Capitella teleta miR-277a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ppc-miR-232 MIMAT0011699 Pristionchus pacificus miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>crm-miR-357 MIMAT0011604 Caenorhabditis remanei miR-357
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>crm-miR-232 MIMAT0011516 Caenorhabditis remanei miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dya-miR-277 MIMAT0009099 Drosophila yakuba miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dwi-miR-277 MIMAT0009040 Drosophila willistoni miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dvi-miR-277-3p MIMAT0008946 Drosophila virilis miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dsi-miR-277 MIMAT0008850 Drosophila simulans miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dse-miR-277 MIMAT0008794 Drosophila sechellia miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dpe-miR-277 MIMAT0008702 Drosophila persimilis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dmo-miR-277 MIMAT0008685 Drosophila mojavensis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dgr-miR-277 MIMAT0008556 Drosophila grimshawi miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>der-miR-277 MIMAT0008517 Drosophila erecta miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dan-miR-277 MIMAT0008407 Drosophila ananassae miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>tca-miR-277-3p MIMAT0008382 Tribolium castaneum miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>sme-miR-277d-3p MIMAT0004024 Schmidtea mediterranea miR-277d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>sme-miR-277c-3p MIMAT0004010 Schmidtea mediterranea miR-277c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>sme-miR-277a-3p MIMAT0004007 Schmidtea mediterranea miR-277a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>sme-miR-124b-5p MIMAT0012113 Schmidtea mediterranea miR-124b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taaatgc 7
|||||||
Sbjct: 8 taaatgc 2
>bmo-miR-277-3p MIMAT0004203 Bombyx mori miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dre-miR-734 MIMAT0003765 Danio rerio miR-734
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 2 taaatgc 8
>ebv-miR-BART14-3p MIMAT0003426 Epstein Barr miR-BART14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>aga-miR-277 MIMAT0001510 Anopheles gambiae miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>ame-miR-277 MIMAT0001481 Apis mellifera miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dps-miR-277 MIMAT0001241 Drosophila pseudoobscura miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cel-lsy-6-5p MIMAT0031896 Caenorhabditis elegans lsy-6-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aaatgcg 8
|||||||
Sbjct: 1 aaatgcg 7
>cbr-miR-232 MIMAT0000497 Caenorhabditis briggsae miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>dme-miR-277-3p MIMAT0000338 Drosophila melanogaster miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
>cel-miR-232-3p MIMAT0000287 Caenorhabditis elegans miR-232-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taaatgc 7
|||||||
Sbjct: 1 taaatgc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 265
Number of extensions: 205
Number of successful extensions: 159
Number of sequences better than 100.0: 59
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 59
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)