BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-9
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a 14 20
tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p 14 20
ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p 12 80
oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a 12 80
oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p 12 80
tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p 12 80
tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p 12 80
chi-miR-200a MIMAT0036045 Capra hircus miR-200a 12 80
chi-miR-141 MIMAT0035962 Capra hircus miR-141 12 80
bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p 12 80
bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p 12 80
bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p 12 80
dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p 12 80
efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141 12 80
efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a 12 80
sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p 12 80
ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p 12 80
bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p 12 80
ppe-miR6274b-3p MIMAT0031553 Prunus persica miR6274b-3p 12 80
ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p 12 80
ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a 12 80
ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141 12 80
lja-miR7531 MIMAT0029354 Lotus japonicus miR7531 12 80
mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p 12 80
ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a 12 80
pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p 12 80
ppe-miR398b MIMAT0027328 Prunus persica miR398b 12 80
ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a 12 80
cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141 12 80
sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141 12 80
sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a 12 80
ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p 12 80
tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p 12 80
hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p 12 80
osa-miR5544 MIMAT0022180 Oryza sativa miR5544 12 80
aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p 12 80
cel-miR-4811-3p MIMAT0019997 Caenorhabditis elegans miR-4811-3p 12 80
hsa-miR-4694-5p MIMAT0019786 Homo sapiens miR-4694-5p 12 80
osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p 12 80
pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p 12 80
cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p 12 80
ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a 12 80
aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p 12 80
tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p 12 80
tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p 12 80
aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p 12 80
eca-miR-141 MIMAT0012970 Equus caballus miR-141 12 80
eca-miR-200a MIMAT0012909 Equus caballus miR-200a 12 80
mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b 12 80
mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a 12 80
bta-miR-2289 MIMAT0011796 Bos taurus miR-2289 12 80
hsa-miR-2053 MIMAT0009978 Homo sapiens miR-2053 12 80
nve-miR-2024g-3p MIMAT0009775 Nematostella vectensis miR-2024g-3p 12 80
bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c 12 80
bta-miR-141 MIMAT0009232 Bos taurus miR-141 12 80
ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a 12 80
ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141 12 80
mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p 12 80
gma-miR1532 MIMAT0007394 Glycine max miR1532 12 80
csa-miR-141 MIMAT0006129 Ciona savignyi miR-141 12 80
cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p 12 80
cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p 12 80
oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus miR-124a-5p 12 80
oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus miR-200a-3p 12 80
mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p 12 80
mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p 12 80
bta-miR-200a MIMAT0003822 Bos taurus miR-200a 12 80
xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a 12 80
ebv-miR-BART9-3p MIMAT0003419 Epstein Barr miR-BART9-3p 12 80
tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a 12 80
fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a 12 80
dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p 12 80
dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p 12 80
dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p 12 80
dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p 12 80
zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p 12 80
gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p 12 80
ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p 12 80
rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p 12 80
rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p 12 80
rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p 12 80
hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p 12 80
mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p 12 80
hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p 12 80
hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p 12 80
mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p 12 80
mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p 12 80
>sbi-miR5387a MIMAT0021685 Sorghum bicolor miR5387a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taacacg 7
|||||||
Sbjct: 1 taacacg 7
>tca-miR-275-5p MIMAT0019123 Tribolium castaneum miR-275-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taacacg 7
|||||||
Sbjct: 7 taacacg 1
>ata-miR164c-3p MIMAT0037243 Aegilops tauschii miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>oha-miR-200a MIMAT0036807 Ophiophagus hannah miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>oha-miR-124-5p MIMAT0036669 Ophiophagus hannah miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>tch-miR-141-3p MIMAT0036489 Tupaia chinensis miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>tch-miR-200a-3p MIMAT0036466 Tupaia chinensis miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>chi-miR-200a MIMAT0036045 Capra hircus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>chi-miR-141 MIMAT0035962 Capra hircus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bra-miR164c-3p MIMAT0035869 Brassica rapa miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>bra-miR164d-3p MIMAT0035867 Brassica rapa miR164d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>bra-miR164b-3p MIMAT0035865 Brassica rapa miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>dvi-miR-9549-5p MIMAT0035642 Drosophila virilis miR-9549-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacac 6
||||||
Sbjct: 8 taacac 3
>efu-miR-141 MIMAT0035097 Eptesicus fuscus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>efu-miR-200a MIMAT0035013 Eptesicus fuscus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>sly-miR164b-3p MIMAT0033976 Solanum lycopersicum miR164b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>ssa-miR-200b-3p MIMAT0032480 Salmo salar miR-200b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bbe-miR-200c-3p MIMAT0031610 Branchiostoma belcheri miR-200c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ppe-miR6274b-3p MIMAT0031553 Prunus persica miR6274b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacac 6
||||||
Sbjct: 8 taacac 3
>ppe-miR7122a-3p MIMAT0031528 Prunus persica miR7122a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>ipu-miR-200a MIMAT0029453 Ictalurus punctatus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ipu-miR-141 MIMAT0029418 Ictalurus punctatus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>lja-miR7531 MIMAT0029354 Lotus japonicus miR7531
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>mmu-miR-7212-3p MIMAT0028393 Mus musculus miR-7212-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ccr-miR-200a MIMAT0026258 Cyprinus carpio miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>pol-miR-124-5p MIMAT0025430 Paralichthys olivaceus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>ppe-miR398b MIMAT0027328 Prunus persica miR398b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>ggo-miR-200a MIMAT0024300 Gorilla gorilla miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>cgr-miR-141 MIMAT0023769 Cricetulus griseus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>sha-miR-141 MIMAT0022826 Sarcophilus harrisii miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>sha-miR-200a MIMAT0022805 Sarcophilus harrisii miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ola-miR-124-5p MIMAT0022689 Oryzias latipes miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>tur-miR-124-1-5p MIMAT0023088 Tetranychus urticae miR-124-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>hvsa-miR-HSUR4-5p MIMAT0022684 Herpesvirus saimiri miR-HSUR4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>osa-miR5544 MIMAT0022180 Oryza sativa miR5544
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacacg 7
||||||
Sbjct: 3 aacacg 8
>aca-miR-200a-3p MIMAT0021845 Anolis carolinensis miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>cel-miR-4811-3p MIMAT0019997 Caenorhabditis elegans miR-4811-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 3 taacac 8
>hsa-miR-4694-5p MIMAT0019786 Homo sapiens miR-4694-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacac 6
||||||
Sbjct: 8 taacac 3
>osa-miR812o-5p MIMAT0019681 Oryza sativa miR812o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>pma-miR-124-5p MIMAT0019444 Petromyzon marinus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>cin-miR-4092-5p MIMAT0016670 Ciona intestinalis miR-4092-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>ppy-miR-200a MIMAT0015796 Pongo pygmaeus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>aly-miR164c-3p MIMAT0017454 Arabidopsis lyrata miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>tgu-miR-200a-3p MIMAT0014545 Taeniopygia guttata miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>tgu-miR-124-5p MIMAT0014630 Taeniopygia guttata miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>aae-miR-263a-3p MIMAT0015372 Aedes aegypti miR-263a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>eca-miR-141 MIMAT0012970 Equus caballus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>eca-miR-200a MIMAT0012909 Equus caballus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mtr-miR2588b MIMAT0013259 Medicago truncatula miR2588b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mtr-miR2588a MIMAT0013258 Medicago truncatula miR2588a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bta-miR-2289 MIMAT0011796 Bos taurus miR-2289
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 7 aacacg 2
>hsa-miR-2053 MIMAT0009978 Homo sapiens miR-2053
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacac 6
||||||
Sbjct: 6 taacac 1
>nve-miR-2024g-3p MIMAT0009775 Nematostella vectensis
miR-2024g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bfl-miR-200c MIMAT0009493 Branchiostoma floridae miR-200c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bta-miR-141 MIMAT0009232 Bos taurus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ptr-miR-200a MIMAT0008063 Pan troglodytes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ptr-miR-141 MIMAT0008036 Pan troglodytes miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mml-miR-200a-3p MIMAT0006233 Macaca mulatta miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>gma-miR1532 MIMAT0007394 Glycine max miR1532
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacacg 7
||||||
Sbjct: 1 aacacg 6
>csa-miR-141 MIMAT0006129 Ciona savignyi miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>cin-miR-141-3p MIMAT0006103 Ciona intestinalis miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>cin-miR-124-2-5p MIMAT0015257 Ciona intestinalis miR-124-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>oan-miR-124a-5p MIMAT0007113 Ornithorhynchus anatinus
miR-124a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>oan-miR-200a-3p MIMAT0006936 Ornithorhynchus anatinus
miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mdo-miR-200a-3p MIMAT0004158 Monodelphis domestica miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mdo-miR-141-3p MIMAT0004151 Monodelphis domestica miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>bta-miR-200a MIMAT0003822 Bos taurus miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>xtr-miR-200a MIMAT0003693 Xenopus tropicalis miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ebv-miR-BART9-3p MIMAT0003419 Epstein Barr miR-BART9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>tni-miR-200a MIMAT0002982 Tetraodon nigroviridis miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>fru-miR-200a MIMAT0002981 Fugu rubripes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>dre-miR-200a-3p MIMAT0001861 Danio rerio miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>dre-miR-141-3p MIMAT0001837 Danio rerio miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>dre-miR-124-6-5p MIMAT0031962 Danio rerio miR-124-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>dre-miR-124-5p MIMAT0031960 Danio rerio miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>zma-miR164a-3p MIMAT0015136 Zea mays miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>gga-miR-200a-3p MIMAT0001171 Gallus gallus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>ath-miR164c-3p MIMAT0031916 Arabidopsis thaliana miR164c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 8 aacacg 3
>rno-miR-200a-3p MIMAT0000874 Rattus norvegicus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>rno-miR-141-3p MIMAT0000846 Rattus norvegicus miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>rno-miR-124-5p MIMAT0004728 Rattus norvegicus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>hsa-miR-200a-3p MIMAT0000682 Homo sapiens miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mmu-miR-200a-3p MIMAT0000519 Mus musculus miR-200a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>hsa-miR-141-3p MIMAT0000432 Homo sapiens miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>hsa-miR-124-5p MIMAT0004591 Homo sapiens miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
>mmu-miR-141-3p MIMAT0000153 Mus musculus miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacac 6
||||||
Sbjct: 1 taacac 6
>mmu-miR-124-5p MIMAT0004527 Mus musculus miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacacg 7
||||||
Sbjct: 6 aacacg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 98
Number of extensions: 96
Number of successful extensions: 87
Number of sequences better than 100.0: 87
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 87
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
