BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h21
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H21 MIMAT0014703 Herpes Simplex miR-H21 14 20
oha-miR-1306-3p MIMAT0036686 Ophiophagus hannah miR-1306-3p 12 80
sbi-miR5568g-3p MIMAT0026466 Sorghum bicolor miR5568g-3p 12 80
bmo-miR-6498-3p MIMAT0025324 Bombyx mori miR-6498-3p 12 80
rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p 12 80
ame-miR-6061 MIMAT0023685 Apis mellifera miR-6061 12 80
osa-miR812r MIMAT0023262 Oryza sativa miR812r 12 80
aca-miR-1306 MIMAT0021738 Anolis carolinensis miR-1306 12 80
pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600 12 80
gma-miR4401a MIMAT0018319 Glycine max miR4401a 12 80
gma-miR1520h MIMAT0018255 Glycine max miR1520h 12 80
tca-miR-3813-3p MIMAT0018649 Tribolium castaneum miR-3813-3p 12 80
cin-miR-4074-3p MIMAT0016637 Ciona intestinalis miR-4074-3p 12 80
bmo-miR-2803 MIMAT0013708 Bombyx mori miR-2803 12 80
cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712 12 80
mtr-miR2626 MIMAT0013347 Medicago truncatula miR2626 12 80
gga-miR-1306-3p MIMAT0007329 Gallus gallus miR-1306-3p 12 80
ptc-miR478n MIMAT0002094 Populus trichocarpa miR478n 12 80
ptc-miR478s MIMAT0002093 Populus trichocarpa miR478s 12 80
ptc-miR478r MIMAT0002092 Populus trichocarpa miR478r 12 80
ptc-miR478q MIMAT0002091 Populus trichocarpa miR478q 12 80
ptc-miR478p MIMAT0002090 Populus trichocarpa miR478p 12 80
ptc-miR478o MIMAT0002089 Populus trichocarpa miR478o 12 80
ptc-miR478m MIMAT0002087 Populus trichocarpa miR478m 12 80
ptc-miR478l MIMAT0002086 Populus trichocarpa miR478l 12 80
ptc-miR478k MIMAT0002085 Populus trichocarpa miR478k 12 80
ptc-miR478j MIMAT0002084 Populus trichocarpa miR478j 12 80
ptc-miR478i MIMAT0002083 Populus trichocarpa miR478i 12 80
ptc-miR478h MIMAT0002082 Populus trichocarpa miR478h 12 80
>hsv2-miR-H21 MIMAT0014703 Herpes Simplex miR-H21
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taacgtc 7
|||||||
Sbjct: 2 taacgtc 8
>oha-miR-1306-3p MIMAT0036686 Ophiophagus hannah miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 8 aacgtc 3
>sbi-miR5568g-3p MIMAT0026466 Sorghum bicolor miR5568g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 3 aacgtc 8
>bmo-miR-6498-3p MIMAT0025324 Bombyx mori miR-6498-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 1 aacgtc 6
>rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 6 aacgtc 1
>ame-miR-6061 MIMAT0023685 Apis mellifera miR-6061
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 6 aacgtc 1
>osa-miR812r MIMAT0023262 Oryza sativa miR812r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacgt 6
||||||
Sbjct: 6 taacgt 1
>aca-miR-1306 MIMAT0021738 Anolis carolinensis miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 8 aacgtc 3
>pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 1 aacgtc 6
>gma-miR4401a MIMAT0018319 Glycine max miR4401a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 3 aacgtc 8
>gma-miR1520h MIMAT0018255 Glycine max miR1520h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 1 aacgtc 6
>tca-miR-3813-3p MIMAT0018649 Tribolium castaneum miR-3813-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 1 aacgtc 6
>cin-miR-4074-3p MIMAT0016637 Ciona intestinalis miR-4074-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taacgt 6
||||||
Sbjct: 8 taacgt 3
>bmo-miR-2803 MIMAT0013708 Bombyx mori miR-2803
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 8 aacgtc 3
>cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 6 aacgtc 1
>mtr-miR2626 MIMAT0013347 Medicago truncatula miR2626
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtc 7
||||||
Sbjct: 1 aacgtc 6
>gga-miR-1306-3p MIMAT0007329 Gallus gallus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtc 7
||||||
Sbjct: 8 aacgtc 3
>ptc-miR478n MIMAT0002094 Populus trichocarpa miR478n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478s MIMAT0002093 Populus trichocarpa miR478s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478r MIMAT0002092 Populus trichocarpa miR478r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478q MIMAT0002091 Populus trichocarpa miR478q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478p MIMAT0002090 Populus trichocarpa miR478p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478o MIMAT0002089 Populus trichocarpa miR478o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478m MIMAT0002087 Populus trichocarpa miR478m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478l MIMAT0002086 Populus trichocarpa miR478l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478k MIMAT0002085 Populus trichocarpa miR478k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478j MIMAT0002084 Populus trichocarpa miR478j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478i MIMAT0002083 Populus trichocarpa miR478i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
>ptc-miR478h MIMAT0002082 Populus trichocarpa miR478h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taacgt 6
||||||
Sbjct: 1 taacgt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 39
Number of extensions: 38
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
