BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-32-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824            16   6.9  
rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus miR-rL1...    16   6.9  
stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p             14      27
prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p         14      27
prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p         14      27
crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601              14      27
mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p                  14      27
cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p        14      27
bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p                   14      27
cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a                  14      27
dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p        14      27
dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster miR-2501-5p       14      27
dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster miR-2489-5p       14      27
lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990                     14      27
hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990                  14      27
ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a                14      27
>sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 taacttac 8
         ||||||||
Sbjct: 1 taacttac 8
>rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus
         miR-rL1-32-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 taacttac 8
         ||||||||
Sbjct: 1 taacttac 8
>stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taactta 7
         |||||||
Sbjct: 8 taactta 2
>prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taactta 7
         |||||||
Sbjct: 1 taactta 7
>cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 8 aacttac 2
>dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taactta 7
         |||||||
Sbjct: 7 taactta 1
>dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster
         miR-2501-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 7 aacttac 1
>dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster
         miR-2489-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taactta 7
         |||||||
Sbjct: 7 taactta 1
>lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 8 aacttac 2
>hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacttac 8
         |||||||
Sbjct: 8 aacttac 2
>ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taactta 7
         |||||||
Sbjct: 7 taactta 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 131
Number of successful extensions: 89
Number of sequences better than 100.0: 16
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)