BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-32-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824 16 6.9
rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus miR-rL1... 16 6.9
stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p 14 27
prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p 14 27
prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p 14 27
crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601 14 27
mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p 14 27
cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p 14 27
bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p 14 27
cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a 14 27
dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p 14 27
dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster miR-2501-5p 14 27
dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster miR-2489-5p 14 27
lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990 14 27
hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990 14 27
ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a 14 27
>sko-miR-4824 MIMAT0020029 Saccoglossus kowalevskii miR-4824
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taacttac 8
||||||||
Sbjct: 1 taacttac 8
>rlcv-miR-rL1-32-5p MIMAT0016957 Rhesus lymphocryptovirus
miR-rL1-32-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taacttac 8
||||||||
Sbjct: 1 taacttac 8
>stu-miR7993b-5p MIMAT0031187 Solanum tuberosum miR7993b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taactta 7
|||||||
Sbjct: 8 taactta 2
>prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>prd-miR-7926-5p MIMAT0030700 Panagrellus redivivus miR-7926-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>crm-miR-7601 MIMAT0029618 Caenorhabditis remanei miR-7601
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>bmo-miR-3297-3p MIMAT0015486 Bombyx mori miR-3297-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taactta 7
|||||||
Sbjct: 1 taactta 7
>cte-miR-1990a MIMAT0013546 Capitella teleta miR-1990a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 8 aacttac 2
>dps-miR-964-3p MIMAT0012256 Drosophila pseudoobscura miR-964-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taactta 7
|||||||
Sbjct: 7 taactta 1
>dme-miR-2501-5p MIMAT0012216 Drosophila melanogaster
miR-2501-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 7 aacttac 1
>dme-miR-2489-5p MIMAT0020910 Drosophila melanogaster
miR-2489-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taactta 7
|||||||
Sbjct: 7 taactta 1
>lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 8 aacttac 2
>hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aacttac 8
|||||||
Sbjct: 8 aacttac 2
>ath-miR1888a MIMAT0007855 Arabidopsis thaliana miR1888a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taactta 7
|||||||
Sbjct: 7 taactta 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 131
Number of successful extensions: 89
Number of sequences better than 100.0: 16
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)