BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart17-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART17-5p MIMAT0003715 Epstein Barr miR-BART17-5p 16 6.9
chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p 14 27
eca-miR-9159 MIMAT0034736 Equus caballus miR-9159 14 27
dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p 14 27
mdm-miR7121h MIMAT0026047 Malus domestica miR7121h 14 27
mdm-miR7121g MIMAT0026046 Malus domestica miR7121g 14 27
mdm-miR7121f MIMAT0026045 Malus domestica miR7121f 14 27
mdm-miR7121e MIMAT0026044 Malus domestica miR7121e 14 27
mdm-miR7121d MIMAT0026043 Malus domestica miR7121d 14 27
mdm-miR7121c MIMAT0026042 Malus domestica miR7121c 14 27
mdm-miR7121b MIMAT0026041 Malus domestica miR7121b 14 27
mdm-miR7121a MIMAT0026040 Malus domestica miR7121a 14 27
mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p 14 27
mmu-miR-6961-3p MIMAT0027823 Mus musculus miR-6961-3p 14 27
hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p 14 27
ppe-miR6293 MIMAT0027329 Prunus persica miR6293 14 27
hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p 14 27
hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916 14 27
mml-miR-627-3p MIMAT0006473 Macaca mulatta miR-627-3p 14 27
gga-miR-1630 MIMAT0007501 Gallus gallus miR-1630 14 27
hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 14 27
>ebv-miR-BART17-5p MIMAT0003715 Epstein Barr miR-BART17-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taagagga 8
||||||||
Sbjct: 1 taagagga 8
>chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>eca-miR-9159 MIMAT0034736 Equus caballus miR-9159
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>dev-miR-D1-3p MIMAT0028170 Duck enteritis miR-D1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121h MIMAT0026047 Malus domestica miR7121h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121g MIMAT0026046 Malus domestica miR7121g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121f MIMAT0026045 Malus domestica miR7121f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121e MIMAT0026044 Malus domestica miR7121e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121d MIMAT0026043 Malus domestica miR7121d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121c MIMAT0026042 Malus domestica miR7121c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121b MIMAT0026041 Malus domestica miR7121b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mdm-miR7121a MIMAT0026040 Malus domestica miR7121a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>mmu-miR-7086-5p MIMAT0028078 Mus musculus miR-7086-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagga 8
|||||||
Sbjct: 1 aagagga 7
>mmu-miR-6961-3p MIMAT0027823 Mus musculus miR-6961-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>hsa-miR-6881-3p MIMAT0027663 Homo sapiens miR-6881-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 8 aagagga 2
>ppe-miR6293 MIMAT0027329 Prunus persica miR6293
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taagagg 7
|||||||
Sbjct: 1 taagagg 7
>hco-miR-5902-3p MIMAT0023353 Haemonchus contortus miR-5902-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagga 8
|||||||
Sbjct: 1 aagagga 7
>hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagga 8
|||||||
Sbjct: 1 aagagga 7
>mml-miR-627-3p MIMAT0006473 Macaca mulatta miR-627-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
>gga-miR-1630 MIMAT0007501 Gallus gallus miR-1630
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagga 8
|||||||
Sbjct: 2 aagagga 8
>hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagga 8
|||||||
Sbjct: 7 aagagga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 165
Number of extensions: 143
Number of successful extensions: 115
Number of sequences better than 100.0: 21
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)