BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p 14 20
chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p 14 20
efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155 14 20
ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p 14 20
ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p 14 20
rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p 14 20
ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155 14 20
ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155 14 20
ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155 14 20
cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155 14 20
aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p 14 20
pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567 14 20
pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155 14 20
ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p 14 20
cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p 14 20
ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155 14 20
tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p 14 20
eca-miR-155 MIMAT0013182 Equus caballus miR-155 14 20
dre-miR-2194 MIMAT0011315 Danio rerio miR-2194 14 20
bta-miR-155 MIMAT0009241 Bos taurus miR-155 14 20
ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155 14 20
cfa-miR-155 MIMAT0006671 Canis familiaris miR-155 14 20
mml-miR-155 MIMAT0006216 Macaca mulatta miR-155 14 20
csa-miR-155 MIMAT0006131 Ciona savignyi miR-155 14 20
cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155 14 20
oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p 14 20
mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p 14 20
xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155 14 20
kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated miR-K1... 14 20
dre-miR-155 MIMAT0001851 Danio rerio miR-155 14 20
gga-miR-155 MIMAT0001106 Gallus gallus miR-155 14 20
hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p 14 20
mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p 14 20
oha-miR-365a-3p MIMAT0036915 Ophiophagus hannah miR-365a-3p 12 80
tch-miR-365a-3p MIMAT0036548 Tupaia chinensis miR-365a-3p 12 80
tch-miR-365b-3p MIMAT0036498 Tupaia chinensis miR-365b-3p 12 80
chi-miR-365-3p MIMAT0036177 Capra hircus miR-365-3p 12 80
nve-miR-9412 MIMAT0035367 Nematostella vectensis miR-9412 12 80
efu-miR-365 MIMAT0035099 Eptesicus fuscus miR-365 12 80
cfa-miR-8871 MIMAT0034368 Canis familiaris miR-8871 12 80
gra-miR172b MIMAT0034141 Gossypium raimondii miR172b 12 80
str-miR-8393-5p MIMAT0033458 Strongyloides ratti miR-8393-5p 12 80
ppc-miR-8244-3p MIMAT0032949 Pristionchus pacificus miR-8244-3p 12 80
ssa-miR-734-3p MIMAT0032739 Salmo salar miR-734-3p 12 80
ssa-miR-365-3p MIMAT0032623 Salmo salar miR-365-3p 12 80
stu-miR7983-3p MIMAT0030851 Solanum tuberosum miR7983-3p 12 80
prd-miR-7934-3p MIMAT0030723 Panagrellus redivivus miR-7934-3p 12 80
prd-miR-7919-5p MIMAT0030678 Panagrellus redivivus miR-7919-5p 12 80
mtr-miR2592br-3p MIMAT0030014 Medicago truncatula miR2592br-3p 12 80
mtr-miR2592bq-3p MIMAT0030012 Medicago truncatula miR2592bq-3p 12 80
mtr-miR2592bp-5p MIMAT0030009 Medicago truncatula miR2592bp-5p 12 80
mtr-miR2592bo-3p MIMAT0030008 Medicago truncatula miR2592bo-3p 12 80
hsa-miR-7157-5p MIMAT0028224 Homo sapiens miR-7157-5p 12 80
ccr-miR-734 MIMAT0026318 Cyprinus carpio miR-734 12 80
ccr-miR-365 MIMAT0026294 Cyprinus carpio miR-365 12 80
ggo-miR-365a MIMAT0024150 Gorilla gorilla miR-365a 12 80
cgr-miR-365-3p MIMAT0023936 Cricetulus griseus miR-365-3p 12 80
spu-miR-5992 MIMAT0023514 Strongylocentrotus purpuratus miR-5992 12 80
hsa-miR-5700 MIMAT0022493 Homo sapiens miR-5700 12 80
aca-miR-5422 MIMAT0022042 Anolis carolinensis miR-5422 12 80
aca-miR-5413-3p MIMAT0022033 Anolis carolinensis miR-5413-3p 12 80
aca-miR-365-3p MIMAT0021948 Anolis carolinensis miR-365-3p 12 80
sly-miR5304 MIMAT0020768 Solanum lycopersicum miR5304 12 80
mtr-miR2592ao MIMAT0021171 Medicago truncatula miR2592ao 12 80
mtr-miR2592an MIMAT0021170 Medicago truncatula miR2592an 12 80
pma-miR-4557 MIMAT0019589 Petromyzon marinus miR-4557 12 80
tca-miR-3849-3p MIMAT0018753 Tribolium castaneum miR-3849-3p 12 80
hsa-miR-4310 MIMAT0016862 Homo sapiens miR-4310 12 80
cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p 12 80
ppy-miR-365 MIMAT0015853 Pongo pygmaeus miR-365 12 80
tgu-miR-365-3p MIMAT0014582 Taeniopygia guttata miR-365-3p 12 80
ssc-miR-365-3p MIMAT0013904 Sus scrofa miR-365-3p 12 80
eca-miR-365 MIMAT0013038 Equus caballus miR-365 12 80
mtr-miR2592n MIMAT0013355 Medicago truncatula miR2592n 12 80
mtr-miR2592m MIMAT0013354 Medicago truncatula miR2592m 12 80
mtr-miR2592l MIMAT0013353 Medicago truncatula miR2592l 12 80
mtr-miR2592k MIMAT0013352 Medicago truncatula miR2592k 12 80
mtr-miR2592h MIMAT0013351 Medicago truncatula miR2592h 12 80
mtr-miR2592g MIMAT0013350 Medicago truncatula miR2592g 12 80
mtr-miR2592a.2-3p MIMAT0013349 Medicago truncatula miR2592a.2-3p 12 80
mtr-miR2592s-3p MIMAT0013279 Medicago truncatula miR2592s-3p 12 80
mtr-miR2592r MIMAT0013278 Medicago truncatula miR2592r 12 80
mtr-miR2592q-3p MIMAT0013277 Medicago truncatula miR2592q-3p 12 80
mtr-miR2592p MIMAT0013276 Medicago truncatula miR2592p 12 80
mtr-miR2592o-3p MIMAT0013275 Medicago truncatula miR2592o-3p 12 80
mtr-miR2592j MIMAT0013274 Medicago truncatula miR2592j 12 80
mtr-miR2592i MIMAT0013273 Medicago truncatula miR2592i 12 80
mtr-miR2592f MIMAT0013272 Medicago truncatula miR2592f 12 80
mtr-miR2592e-3p MIMAT0013271 Medicago truncatula miR2592e-3p 12 80
mtr-miR2592d-3p MIMAT0013270 Medicago truncatula miR2592d-3p 12 80
mtr-miR2592c MIMAT0013269 Medicago truncatula miR2592c 12 80
mtr-miR2592b-3p MIMAT0013268 Medicago truncatula miR2592b-3p 12 80
crm-miR-786 MIMAT0011503 Caenorhabditis remanei miR-786 12 80
sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea miR-124c-2-5p 12 80
osa-miR2093-5p MIMAT0010050 Oryza sativa miR2093-5p 12 80
nve-miR-2034-3p MIMAT0009791 Nematostella vectensis miR-2034-3p 12 80
sko-miR-365-3p MIMAT0009643 Saccoglossus kowalevskii miR-365-3p 12 80
ptr-miR-365 MIMAT0008117 Pan troglodytes miR-365 12 80
osa-miR1853-5p MIMAT0007773 Oryza sativa miR1853-5p 12 80
mml-miR-365-3p MIMAT0006291 Macaca mulatta miR-365-3p 12 80
gga-miR-1775-5p MIMAT0026784 Gallus gallus miR-1775-5p 12 80
oan-miR-365-3p MIMAT0006823 Ornithorhynchus anatinus miR-365-3p 12 80
ppt-miR1031b MIMAT0005134 Physcomitrella patens miR1031b 12 80
ppt-miR1031a MIMAT0005133 Physcomitrella patens miR1031a 12 80
bta-miR-365-3p MIMAT0004341 Bos taurus miR-365-3p 12 80
cbr-miR-786 MIMAT0004287 Caenorhabditis briggsae miR-786 12 80
mdo-miR-365-3p MIMAT0004137 Monodelphis domestica miR-365-3p 12 80
cel-miR-786-3p MIMAT0004221 Caenorhabditis elegans miR-786-3p 12 80
sme-miR-1a-5p MIMAT0012090 Schmidtea mediterranea miR-1a-5p 12 80
xtr-miR-365 MIMAT0003637 Xenopus tropicalis miR-365 12 80
ebv-miR-BART14-3p MIMAT0003426 Epstein Barr miR-BART14-3p 12 80
gga-miR-365-3p MIMAT0003361 Gallus gallus miR-365-3p 12 80
tni-miR-365 MIMAT0002968 Tetraodon nigroviridis miR-365 12 80
fru-miR-365 MIMAT0002967 Fugu rubripes miR-365 12 80
dre-miR-365 MIMAT0001875 Danio rerio miR-365 12 80
rno-miR-365-3p MIMAT0001549 Rattus norvegicus miR-365-3p 12 80
cfa-miR-365 MIMAT0001540 Canis familiaris miR-365 12 80
cel-miR-392-5p MIMAT0020344 Caenorhabditis elegans miR-392-5p 12 80
hsa-miR-365b-3p MIMAT0022834 Homo sapiens miR-365b-3p 12 80
mmu-miR-365-3p MIMAT0000711 Mus musculus miR-365-3p 12 80
hsa-miR-365a-3p MIMAT0000710 Homo sapiens miR-365a-3p 12 80
>tch-miR-155-5p MIMAT0036472 Tupaia chinensis miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>chi-miR-155-5p MIMAT0035988 Capra hircus miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>efu-miR-155 MIMAT0035061 Eptesicus fuscus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ppc-miR-8328-3p MIMAT0033201 Pristionchus pacificus miR-8328-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 1 taatgct 7
>ssa-miR-155-5p MIMAT0032392 Salmo salar miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>rno-miR-155-5p MIMAT0030409 Rattus norvegicus miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ipu-miR-155 MIMAT0029429 Ictalurus punctatus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ccr-miR-155 MIMAT0026231 Cyprinus carpio miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ggo-miR-155 MIMAT0024221 Gorilla gorilla miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>cgr-miR-155 MIMAT0023788 Cricetulus griseus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>aca-miR-155-5p MIMAT0021788 Anolis carolinensis miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 1 taatgct 7
>pma-miR-155 MIMAT0019485 Petromyzon marinus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ssc-miR-155-5p MIMAT0022959 Sus scrofa miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>cin-miR-4012-3p MIMAT0016513 Ciona intestinalis miR-4012-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taatgct 7
|||||||
Sbjct: 7 taatgct 1
>ppy-miR-155 MIMAT0015777 Pongo pygmaeus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>tgu-miR-155-5p MIMAT0014612 Taeniopygia guttata miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>eca-miR-155 MIMAT0013182 Equus caballus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>dre-miR-2194 MIMAT0011315 Danio rerio miR-2194
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>bta-miR-155 MIMAT0009241 Bos taurus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>ptr-miR-155 MIMAT0008048 Pan troglodytes miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>cfa-miR-155 MIMAT0006671 Canis familiaris miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>mml-miR-155 MIMAT0006216 Macaca mulatta miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>csa-miR-155 MIMAT0006131 Ciona savignyi miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>cin-miR-155 MIMAT0006105 Ciona intestinalis miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>oan-miR-155-5p MIMAT0006988 Ornithorhynchus anatinus miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>mdv1-miR-M4-5p MIMAT0003924 Mareks disease miR-M4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>xtr-miR-155 MIMAT0003608 Xenopus tropicalis miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>kshv-miR-K12-11-3p MIMAT0002181 Kaposi sarcoma-associated
miR-K12-11-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>dre-miR-155 MIMAT0001851 Danio rerio miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>gga-miR-155 MIMAT0001106 Gallus gallus miR-155
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>hsa-miR-155-5p MIMAT0000646 Homo sapiens miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>mmu-miR-155-5p MIMAT0000165 Mus musculus miR-155-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taatgct 7
|||||||
Sbjct: 2 taatgct 8
>oha-miR-365a-3p MIMAT0036915 Ophiophagus hannah miR-365a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>tch-miR-365a-3p MIMAT0036548 Tupaia chinensis miR-365a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>tch-miR-365b-3p MIMAT0036498 Tupaia chinensis miR-365b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>chi-miR-365-3p MIMAT0036177 Capra hircus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>nve-miR-9412 MIMAT0035367 Nematostella vectensis miR-9412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>efu-miR-365 MIMAT0035099 Eptesicus fuscus miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cfa-miR-8871 MIMAT0034368 Canis familiaris miR-8871
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>gra-miR172b MIMAT0034141 Gossypium raimondii miR172b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 8 aatgct 3
>str-miR-8393-5p MIMAT0033458 Strongyloides ratti miR-8393-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 6 aatgct 1
>ppc-miR-8244-3p MIMAT0032949 Pristionchus pacificus miR-8244-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ssa-miR-734-3p MIMAT0032739 Salmo salar miR-734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>ssa-miR-365-3p MIMAT0032623 Salmo salar miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>stu-miR7983-3p MIMAT0030851 Solanum tuberosum miR7983-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 3 taatgc 8
>prd-miR-7934-3p MIMAT0030723 Panagrellus redivivus miR-7934-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>prd-miR-7919-5p MIMAT0030678 Panagrellus redivivus miR-7919-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>mtr-miR2592br-3p MIMAT0030014 Medicago truncatula miR2592br-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592bq-3p MIMAT0030012 Medicago truncatula miR2592bq-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592bp-5p MIMAT0030009 Medicago truncatula miR2592bp-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592bo-3p MIMAT0030008 Medicago truncatula miR2592bo-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>hsa-miR-7157-5p MIMAT0028224 Homo sapiens miR-7157-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 8 aatgct 3
>ccr-miR-734 MIMAT0026318 Cyprinus carpio miR-734
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>ccr-miR-365 MIMAT0026294 Cyprinus carpio miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ggo-miR-365a MIMAT0024150 Gorilla gorilla miR-365a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cgr-miR-365-3p MIMAT0023936 Cricetulus griseus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>spu-miR-5992 MIMAT0023514 Strongylocentrotus purpuratus
miR-5992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taatgc 6
||||||
Sbjct: 8 taatgc 3
>hsa-miR-5700 MIMAT0022493 Homo sapiens miR-5700
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>aca-miR-5422 MIMAT0022042 Anolis carolinensis miR-5422
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 8 aatgct 3
>aca-miR-5413-3p MIMAT0022033 Anolis carolinensis miR-5413-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>aca-miR-365-3p MIMAT0021948 Anolis carolinensis miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>sly-miR5304 MIMAT0020768 Solanum lycopersicum miR5304
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>mtr-miR2592ao MIMAT0021171 Medicago truncatula miR2592ao
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592an MIMAT0021170 Medicago truncatula miR2592an
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>pma-miR-4557 MIMAT0019589 Petromyzon marinus miR-4557
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>tca-miR-3849-3p MIMAT0018753 Tribolium castaneum miR-3849-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 6 aatgct 1
>hsa-miR-4310 MIMAT0016862 Homo sapiens miR-4310
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 8 aatgct 3
>cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 1 aatgct 6
>ppy-miR-365 MIMAT0015853 Pongo pygmaeus miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>tgu-miR-365-3p MIMAT0014582 Taeniopygia guttata miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ssc-miR-365-3p MIMAT0013904 Sus scrofa miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>eca-miR-365 MIMAT0013038 Equus caballus miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>mtr-miR2592n MIMAT0013355 Medicago truncatula miR2592n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592m MIMAT0013354 Medicago truncatula miR2592m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592l MIMAT0013353 Medicago truncatula miR2592l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592k MIMAT0013352 Medicago truncatula miR2592k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592h MIMAT0013351 Medicago truncatula miR2592h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592g MIMAT0013350 Medicago truncatula miR2592g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592a.2-3p MIMAT0013349 Medicago truncatula
miR2592a.2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592s-3p MIMAT0013279 Medicago truncatula miR2592s-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592r MIMAT0013278 Medicago truncatula miR2592r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592q-3p MIMAT0013277 Medicago truncatula miR2592q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592p MIMAT0013276 Medicago truncatula miR2592p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592o-3p MIMAT0013275 Medicago truncatula miR2592o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592j MIMAT0013274 Medicago truncatula miR2592j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592i MIMAT0013273 Medicago truncatula miR2592i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592f MIMAT0013272 Medicago truncatula miR2592f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592e-3p MIMAT0013271 Medicago truncatula miR2592e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592d-3p MIMAT0013270 Medicago truncatula miR2592d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592c MIMAT0013269 Medicago truncatula miR2592c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>mtr-miR2592b-3p MIMAT0013268 Medicago truncatula miR2592b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 2 aatgct 7
>crm-miR-786 MIMAT0011503 Caenorhabditis remanei miR-786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>sme-miR-124c-2-5p MIMAT0013778 Schmidtea mediterranea
miR-124c-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taatgc 6
||||||
Sbjct: 6 taatgc 1
>osa-miR2093-5p MIMAT0010050 Oryza sativa miR2093-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taatgc 6
||||||
Sbjct: 8 taatgc 3
>nve-miR-2034-3p MIMAT0009791 Nematostella vectensis miR-2034-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 3 taatgc 8
>sko-miR-365-3p MIMAT0009643 Saccoglossus kowalevskii miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ptr-miR-365 MIMAT0008117 Pan troglodytes miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>osa-miR1853-5p MIMAT0007773 Oryza sativa miR1853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 6 aatgct 1
>mml-miR-365-3p MIMAT0006291 Macaca mulatta miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>gga-miR-1775-5p MIMAT0026784 Gallus gallus miR-1775-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>oan-miR-365-3p MIMAT0006823 Ornithorhynchus anatinus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ppt-miR1031b MIMAT0005134 Physcomitrella patens miR1031b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>ppt-miR1031a MIMAT0005133 Physcomitrella patens miR1031a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>bta-miR-365-3p MIMAT0004341 Bos taurus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cbr-miR-786 MIMAT0004287 Caenorhabditis briggsae miR-786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>mdo-miR-365-3p MIMAT0004137 Monodelphis domestica miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cel-miR-786-3p MIMAT0004221 Caenorhabditis elegans miR-786-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>sme-miR-1a-5p MIMAT0012090 Schmidtea mediterranea miR-1a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 6 aatgct 1
>xtr-miR-365 MIMAT0003637 Xenopus tropicalis miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>ebv-miR-BART14-3p MIMAT0003426 Epstein Barr miR-BART14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aatgct 7
||||||
Sbjct: 3 aatgct 8
>gga-miR-365-3p MIMAT0003361 Gallus gallus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>tni-miR-365 MIMAT0002968 Tetraodon nigroviridis miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>fru-miR-365 MIMAT0002967 Fugu rubripes miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>dre-miR-365 MIMAT0001875 Danio rerio miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>rno-miR-365-3p MIMAT0001549 Rattus norvegicus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cfa-miR-365 MIMAT0001540 Canis familiaris miR-365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>cel-miR-392-5p MIMAT0020344 Caenorhabditis elegans miR-392-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aatgct 7
||||||
Sbjct: 6 aatgct 1
>hsa-miR-365b-3p MIMAT0022834 Homo sapiens miR-365b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>mmu-miR-365-3p MIMAT0000711 Mus musculus miR-365-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
>hsa-miR-365a-3p MIMAT0000710 Homo sapiens miR-365a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taatgc 6
||||||
Sbjct: 1 taatgc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 142
Number of successful extensions: 121
Number of sequences better than 100.0: 121
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 121
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
