BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-10
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p                 14      27
efu-miR-9359 MIMAT0035170 Eptesicus fuscus miR-9359                    14      27
cel-miR-8201-3p MIMAT0032816 Caenorhabditis elegans miR-8201-3p        14      27
cel-miR-8198-3p MIMAT0032810 Caenorhabditis elegans miR-8198-3p        14      27
hhi-miR-7792 MIMAT0030337 Hippoglossus hippoglossus miR-7792           14      27
crm-miR-7609 MIMAT0029627 Caenorhabditis remanei miR-7609              14      27
oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus miR-7435-3p      14      27
tca-miR-3873-3p MIMAT0018839 Tribolium castaneum miR-3873-3p           14      27
cre-miR1153-3p.2 MIMAT0005400 Chlamydomonas reinhardtii miR1153-...    14      27
cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p        14      27
>bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 7 aattaca 1
>efu-miR-9359 MIMAT0035170 Eptesicus fuscus miR-9359
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taattac 7
         |||||||
Sbjct: 1 taattac 7
>cel-miR-8201-3p MIMAT0032816 Caenorhabditis elegans miR-8201-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 1 aattaca 7
>cel-miR-8198-3p MIMAT0032810 Caenorhabditis elegans miR-8198-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taattac 7
         |||||||
Sbjct: 1 taattac 7
>hhi-miR-7792 MIMAT0030337 Hippoglossus hippoglossus miR-7792
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 7 aattaca 1
>crm-miR-7609 MIMAT0029627 Caenorhabditis remanei miR-7609
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 7 aattaca 1
>oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus
         miR-7435-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 1 aattaca 7
>tca-miR-3873-3p MIMAT0018839 Tribolium castaneum miR-3873-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 8 aattaca 2
>cre-miR1153-3p.2 MIMAT0005400 Chlamydomonas reinhardtii
         miR1153-3p.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 8 aattaca 2
>cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aattaca 8
         |||||||
Sbjct: 8 aattaca 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 105
Number of extensions: 95
Number of successful extensions: 82
Number of sequences better than 100.0: 10
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)