BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d4-3p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

oan-miR-216b-3p MIMAT0029021 Ornithorhynchus anatinus miR-216b-3p      14      20
dev-miR-D4-3p MIMAT0028173 Duck enteritis miR-D4-3p                    14      20
hvu-miR5049d MIMAT0024813 Hordeum vulgare miR5049d                     14      20
gma-miR5674b MIMAT0023248 Glycine max miR5674b                         14      20
gma-miR5674a MIMAT0022459 Glycine max miR5674a                         14      20
tgu-miR-216b-3p MIMAT0027018 Taeniopygia guttata miR-216b-3p           14      20
ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p                    12      80
gma-miR9753 MIMAT0036384 Glycine max miR9753                           12      80
bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p                 12      80
eca-miR-9118 MIMAT0034667 Equus caballus miR-9118                      12      80
cfa-miR-8839 MIMAT0034332 Canis familiaris miR-8839                    12      80
pxy-miR-8541 MIMAT0033800 Plutella xylostella miR-8541                 12      80
ssa-miR-7552a-5p MIMAT0032752 Salmo salar miR-7552a-5p                 12      80
ssa-miR-7552b-5p MIMAT0032750 Salmo salar miR-7552b-5p                 12      80
ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p                   12      80
ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p                   12      80
stu-miR8025-3p MIMAT0031203 Solanum tuberosum miR8025-3p               12      80
mtr-miR2664b MIMAT0029975 Medicago truncatula miR2664b                 12      80
ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a                 12      80
oan-miR-7415-5p MIMAT0028978 Ornithorhynchus anatinus miR-7415-5p      12      80
hvu-miR5049c MIMAT0024803 Hordeum vulgare miR5049c                     12      80
tca-miR-3814-5p MIMAT0018652 Tribolium castaneum miR-3814-5p           12      80
cin-miR-4177-3p MIMAT0016787 Ciona intestinalis miR-4177-3p            12      80
cin-miR-4084-3p MIMAT0016658 Ciona intestinalis miR-4084-3p            12      80
cin-miR-4037-5p MIMAT0016563 Ciona intestinalis miR-4037-5p            12      80
aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p              12      80
rlcv-miR-rL1-25-3p MIMAT0016949 Rhesus lymphocryptovirus miR-rL1...    12      80
aqc-miR171c MIMAT0012568 Aquilegia caerulea miR171c                    12      80
aqc-miR171f MIMAT0012565 Aquilegia caerulea miR171f                    12      80
mtr-miR2664a MIMAT0013471 Medicago truncatula miR2664a                 12      80
mtr-miR2606b MIMAT0013311 Medicago truncatula miR2606b                 12      80
mtr-miR2606a MIMAT0013310 Medicago truncatula miR2606a                 12      80
ppc-miR-2244 MIMAT0011673 Pristionchus pacificus miR-2244              12      80
cel-miR-2220-3p MIMAT0011462 Caenorhabditis elegans miR-2220-3p        12      80
bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p                      12      80
ptr-miR-302f MIMAT0008091 Pan troglodytes miR-302f                     12      80
ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p             12      80
osa-miR1853-3p MIMAT0007774 Oryza sativa miR1853-3p                    12      80
cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p                12      80
mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p                  12      80
gga-miR-1416-3p MIMAT0007286 Gallus gallus miR-1416-3p                 12      80
oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p        12      80
hsa-miR-302f MIMAT0005932 Homo sapiens miR-302f                        12      80
mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica miR-219-1-3p       12      80
cel-miR-800-5p MIMAT0020354 Caenorhabditis elegans miR-800-5p          12      80
dre-miR-96-3p MIMAT0031956 Danio rerio miR-96-3p                       12      80
rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p         12      80
mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p              12      80
hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p              12      80
>oan-miR-216b-3p MIMAT0029021 Ornithorhynchus anatinus
         miR-216b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 7 taattgt 1
>dev-miR-D4-3p MIMAT0028173 Duck enteritis miR-D4-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 2 taattgt 8
>hvu-miR5049d MIMAT0024813 Hordeum vulgare miR5049d
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 8 taattgt 2
>gma-miR5674b MIMAT0023248 Glycine max miR5674b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 1 taattgt 7
>gma-miR5674a MIMAT0022459 Glycine max miR5674a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 1 taattgt 7
>tgu-miR-216b-3p MIMAT0027018 Taeniopygia guttata miR-216b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 taattgt 7
         |||||||
Sbjct: 7 taattgt 1
>ssc-miR-219b-3p MIMAT0037083 Sus scrofa miR-219b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>gma-miR9753 MIMAT0036384 Glycine max miR9753
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 6 aattgt 1
>bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 3 taattg 8
>eca-miR-9118 MIMAT0034667 Equus caballus miR-9118
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>cfa-miR-8839 MIMAT0034332 Canis familiaris miR-8839
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>pxy-miR-8541 MIMAT0033800 Plutella xylostella miR-8541
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>ssa-miR-7552a-5p MIMAT0032752 Salmo salar miR-7552a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>ssa-miR-7552b-5p MIMAT0032750 Salmo salar miR-7552b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>ssa-miR-219b-3p MIMAT0032529 Salmo salar miR-219b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>ssa-miR-219a-3p MIMAT0032527 Salmo salar miR-219a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>stu-miR8025-3p MIMAT0031203 Solanum tuberosum miR8025-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 3 taattg 8
>mtr-miR2664b MIMAT0029975 Medicago truncatula miR2664b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 1 aattgt 6
>ipu-miR-219a MIMAT0029474 Ictalurus punctatus miR-219a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>oan-miR-7415-5p MIMAT0028978 Ornithorhynchus anatinus
         miR-7415-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 2 aattgt 7
>hvu-miR5049c MIMAT0024803 Hordeum vulgare miR5049c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>tca-miR-3814-5p MIMAT0018652 Tribolium castaneum miR-3814-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 7 aattgt 2
>cin-miR-4177-3p MIMAT0016787 Ciona intestinalis miR-4177-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>cin-miR-4084-3p MIMAT0016658 Ciona intestinalis miR-4084-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>cin-miR-4037-5p MIMAT0016563 Ciona intestinalis miR-4037-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 6 aattgt 1
>aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 1 aattgt 6
>rlcv-miR-rL1-25-3p MIMAT0016949 Rhesus lymphocryptovirus
         miR-rL1-25-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>aqc-miR171c MIMAT0012568 Aquilegia caerulea miR171c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>aqc-miR171f MIMAT0012565 Aquilegia caerulea miR171f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>mtr-miR2664a MIMAT0013471 Medicago truncatula miR2664a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 1 aattgt 6
>mtr-miR2606b MIMAT0013311 Medicago truncatula miR2606b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 7 aattgt 2
>mtr-miR2606a MIMAT0013310 Medicago truncatula miR2606a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 7 aattgt 2
>ppc-miR-2244 MIMAT0011673 Pristionchus pacificus miR-2244
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>cel-miR-2220-3p MIMAT0011462 Caenorhabditis elegans miR-2220-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>bta-miR-219-3p MIMAT0012547 Bos taurus miR-219-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>ptr-miR-302f MIMAT0008091 Pan troglodytes miR-302f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>ptr-miR-219-2-3p MIMAT0009194 Pan troglodytes miR-219-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>osa-miR1853-3p MIMAT0007774 Oryza sativa miR1853-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>cfa-miR-219-3p MIMAT0006729 Canis familiaris miR-219-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>mml-miR-219-3p MIMAT0006246 Macaca mulatta miR-219-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>gga-miR-1416-3p MIMAT0007286 Gallus gallus miR-1416-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 6 aattgt 1

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>oan-miR-219-3p MIMAT0006900 Ornithorhynchus anatinus miR-219-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>hsa-miR-302f MIMAT0005932 Homo sapiens miR-302f
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 taattg 6
         ||||||
Sbjct: 1 taattg 6
>mdo-miR-219-1-3p MIMAT0026681 Monodelphis domestica
         miR-219-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>cel-miR-800-5p MIMAT0020354 Caenorhabditis elegans miR-800-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 8 aattgt 3
>dre-miR-96-3p MIMAT0031956 Danio rerio miR-96-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 taattg 6
         ||||||
Sbjct: 6 taattg 1
>rno-miR-219a-2-3p MIMAT0005446 Rattus norvegicus miR-219a-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>mmu-miR-219a-2-3p MIMAT0022841 Mus musculus miR-219a-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
>hsa-miR-219a-2-3p MIMAT0004675 Homo sapiens miR-219a-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aattgt 7
         ||||||
Sbjct: 3 aattgt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 58
Number of successful extensions: 50
Number of sequences better than 100.0: 49
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)