BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart22
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppy-miR-520i MIMAT0036452 Pongo pygmaeus miR-520i 14 20
ggo-miR-524-5p MIMAT0036423 Gorilla gorilla miR-524-5p 14 20
bra-miR9553-5p MIMAT0035659 Brassica rapa miR9553-5p 14 20
cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85 14 20
mdo-miR-7371c-5p MIMAT0028778 Monodelphis domestica miR-7371c-5p 14 20
mml-miR-1283 MIMAT0024352 Macaca mulatta miR-1283 14 20
bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae miR-4875d-3p 14 20
ppy-miR-524-5p MIMAT0015980 Pongo pygmaeus miR-524-5p 14 20
ppy-miR-520d-5p MIMAT0015971 Pongo pygmaeus miR-520d-5p 14 20
mml-miR-524-5p MIMAT0012777 Macaca mulatta miR-524-5p 14 20
crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85 14 20
ebv-miR-BART22 MIMAT0010132 Epstein Barr miR-BART22 14 20
mml-miR-518a-5p MIMAT0006377 Macaca mulatta miR-518a-5p 14 20
hsa-miR-520d-5p MIMAT0002855 Homo sapiens miR-520d-5p 14 20
hsa-miR-524-5p MIMAT0002849 Homo sapiens miR-524-5p 14 20
cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85 14 20
cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p 14 20
ggo-miR-520g MIMAT0036434 Gorilla gorilla miR-520g 12 80
bra-miR158-5p MIMAT0035701 Brassica rapa miR158-5p 12 80
gra-miR7484m MIMAT0034234 Gossypium raimondii miR7484m 12 80
gra-miR8783 MIMAT0034233 Gossypium raimondii miR8783 12 80
atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607 12 80
ppc-miR-8344-3p MIMAT0033235 Pristionchus pacificus miR-8344-3p 12 80
ppc-miR-8229a-5p MIMAT0032902 Pristionchus pacificus miR-8229a-5p 12 80
ssa-miR-8158-3p MIMAT0032741 Salmo salar miR-8158-3p 12 80
bma-miR-239 MIMAT0031742 Brugia malayi miR-239 12 80
bbe-miR-4874-5p MIMAT0031697 Branchiostoma belcheri miR-4874-5p 12 80
prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p 12 80
prd-miR-7956-3p MIMAT0030799 Panagrellus redivivus miR-7956-3p 12 80
cbn-miR-239d MIMAT0029730 Caenorhabditis brenneri miR-239d 12 80
cbn-miR-239c MIMAT0029729 Caenorhabditis brenneri miR-239c 12 80
cbn-miR-239a MIMAT0029728 Caenorhabditis brenneri miR-239a 12 80
cbn-miR-239b MIMAT0029727 Caenorhabditis brenneri miR-239b 12 80
cbn-miR-238 MIMAT0029726 Caenorhabditis brenneri miR-238 12 80
crm-miR-2254 MIMAT0029641 Caenorhabditis remanei miR-2254 12 80
ghr-miR7484b MIMAT0029125 Gossypium hirsutum miR7484b 12 80
ghr-miR7484a MIMAT0029124 Gossypium hirsutum miR7484a 12 80
mdo-miR-7371f-5p MIMAT0028784 Monodelphis domestica miR-7371f-5p 12 80
mdo-miR-7371e-5p MIMAT0028782 Monodelphis domestica miR-7371e-5p 12 80
mdo-miR-7371d-5p MIMAT0028780 Monodelphis domestica miR-7371d-5p 12 80
mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica miR-7371b-5p 12 80
mdo-miR-7371a-5p MIMAT0028772 Monodelphis domestica miR-7371a-5p 12 80
mml-miR-7201-5p MIMAT0028366 Macaca mulatta miR-7201-5p 12 80
bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845 12 80
mmu-miR-6994-5p MIMAT0027890 Mus musculus miR-6994-5p 12 80
mmu-miR-6896-5p MIMAT0027692 Mus musculus miR-6896-5p 12 80
hsa-miR-6844 MIMAT0027589 Homo sapiens miR-6844 12 80
ptc-miR6450a MIMAT0025254 Populus trichocarpa miR6450a 12 80
ptr-miR-3149 MIMAT0024056 Pan troglodytes miR-3149 12 80
ath-miR4245 MIMAT0023523 Arabidopsis thaliana miR4245 12 80
hco-miR-5893 MIMAT0023332 Haemonchus contortus miR-5893 12 80
mtr-miR5748 MIMAT0023128 Medicago truncatula miR5748 12 80
tur-miR-305-5p MIMAT0023114 Tetranychus urticae miR-305-5p 12 80
osa-miR5513 MIMAT0022146 Oryza sativa miR5513 12 80
asu-miR-239-5p MIMAT0021521 Ascaris suum miR-239-5p 12 80
mtr-miR5260 MIMAT0021260 Medicago truncatula miR5260 12 80
mtr-miR5226 MIMAT0021184 Medicago truncatula miR5226 12 80
dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster miR-4967-3p 12 80
cel-miR-4936 MIMAT0020142 Caenorhabditis elegans miR-4936 12 80
bfl-miR-4874-5p MIMAT0020453 Branchiostoma floridae miR-4874-5p 12 80
hsa-miR-3973 MIMAT0019358 Homo sapiens miR-3973 12 80
ath-miR3932b-3p MIMAT0018347 Arabidopsis thaliana miR3932b-3p 12 80
ath-miR3932a MIMAT0018346 Arabidopsis thaliana miR3932a 12 80
dpu-miR-305 MIMAT0018924 Daphnia pulex miR-305 12 80
aly-miR4245 MIMAT0017934 Arabidopsis lyrata miR4245 12 80
cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p 12 80
cin-miR-4024-5p MIMAT0016539 Ciona intestinalis miR-4024-5p 12 80
cin-miR-4006c-3p MIMAT0016475 Ciona intestinalis miR-4006c-3p 12 80
ppy-miR-1283a MIMAT0016204 Pongo pygmaeus miR-1283a 12 80
ppy-miR-520h MIMAT0015976 Pongo pygmaeus miR-520h 12 80
ppy-miR-520g MIMAT0015975 Pongo pygmaeus miR-520g 12 80
aly-miR158a-5p MIMAT0017421 Arabidopsis lyrata miR158a-5p 12 80
bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290 12 80
hsa-miR-3149 MIMAT0015022 Homo sapiens miR-3149 12 80
bmo-miR-2831 MIMAT0013744 Bombyx mori miR-2831 12 80
bmo-miR-2814 MIMAT0013723 Bombyx mori miR-2814 12 80
bta-miR-2479 MIMAT0012071 Bos taurus miR-2479 12 80
ppc-miR-2254 MIMAT0011676 Pristionchus pacificus miR-2254 12 80
ppc-miR-239 MIMAT0011646 Pristionchus pacificus miR-239 12 80
crm-miR-239a-5p MIMAT0011616 Caenorhabditis remanei miR-239a-5p 12 80
crm-miR-239b MIMAT0011536 Caenorhabditis remanei miR-239b 12 80
crm-miR-238 MIMAT0011520 Caenorhabditis remanei miR-238 12 80
cbr-miR-2223 MIMAT0011492 Caenorhabditis briggsae miR-2223 12 80
cbr-miR-238 MIMAT0011465 Caenorhabditis briggsae miR-238 12 80
osa-miR2099-3p MIMAT0010063 Oryza sativa miR2099-3p 12 80
ptr-miR-520h MIMAT0008204 Pan troglodytes miR-520h 12 80
ptr-miR-520g MIMAT0008203 Pan troglodytes miR-520g 12 80
ptr-miR-1283a MIMAT0008002 Pan troglodytes miR-1283a 12 80
mml-miR-520g MIMAT0006395 Macaca mulatta miR-520g 12 80
mdv2-miR-M26-5p MIMAT0004471 Mareks disease miR-M26-5p 12 80
hsa-miR-1283 MIMAT0005799 Homo sapiens miR-1283 12 80
hsa-miR-520h MIMAT0002867 Homo sapiens miR-520h 12 80
hsa-miR-520g-3p MIMAT0002858 Homo sapiens miR-520g-3p 12 80
cbr-miR-239a MIMAT0001304 Caenorhabditis briggsae miR-239a 12 80
cel-miR-239b-5p MIMAT0000295 Caenorhabditis elegans miR-239b-5p 12 80
cel-miR-239a-5p MIMAT0000294 Caenorhabditis elegans miR-239a-5p 12 80
cel-miR-238-3p MIMAT0000293 Caenorhabditis elegans miR-238-3p 12 80
ath-miR158a-5p MIMAT0031873 Arabidopsis thaliana miR158a-5p 12 80
>ppy-miR-520i MIMAT0036452 Pongo pygmaeus miR-520i
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>ggo-miR-524-5p MIMAT0036423 Gorilla gorilla miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>bra-miR9553-5p MIMAT0035659 Brassica rapa miR9553-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>cbn-miR-85 MIMAT0029780 Caenorhabditis brenneri miR-85
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>mdo-miR-7371c-5p MIMAT0028778 Monodelphis domestica
miR-7371c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaaag 7
|||||||
Sbjct: 7 tacaaag 1
>mml-miR-1283 MIMAT0024352 Macaca mulatta miR-1283
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>bfl-miR-4875d-3p MIMAT0020458 Branchiostoma floridae
miR-4875d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>ppy-miR-524-5p MIMAT0015980 Pongo pygmaeus miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>ppy-miR-520d-5p MIMAT0015971 Pongo pygmaeus miR-520d-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>mml-miR-524-5p MIMAT0012777 Macaca mulatta miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>crm-miR-85 MIMAT0011531 Caenorhabditis remanei miR-85
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>ebv-miR-BART22 MIMAT0010132 Epstein Barr miR-BART22
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>mml-miR-518a-5p MIMAT0006377 Macaca mulatta miR-518a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>hsa-miR-520d-5p MIMAT0002855 Homo sapiens miR-520d-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>hsa-miR-524-5p MIMAT0002849 Homo sapiens miR-524-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 2 tacaaag 8
>cbr-miR-85 MIMAT0000490 Caenorhabditis briggsae miR-85
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>cel-miR-85-3p MIMAT0000058 Caenorhabditis elegans miR-85-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacaaag 7
|||||||
Sbjct: 1 tacaaag 7
>ggo-miR-520g MIMAT0036434 Gorilla gorilla miR-520g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>bra-miR158-5p MIMAT0035701 Brassica rapa miR158-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 6 acaaag 1
>gra-miR7484m MIMAT0034234 Gossypium raimondii miR7484m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>gra-miR8783 MIMAT0034233 Gossypium raimondii miR8783
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ppc-miR-8344-3p MIMAT0033235 Pristionchus pacificus miR-8344-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ppc-miR-8229a-5p MIMAT0032902 Pristionchus pacificus
miR-8229a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 6 acaaag 1
>ssa-miR-8158-3p MIMAT0032741 Salmo salar miR-8158-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>bma-miR-239 MIMAT0031742 Brugia malayi miR-239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>bbe-miR-4874-5p MIMAT0031697 Branchiostoma belcheri miR-4874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 8 tacaaa 3
>prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>prd-miR-7956-3p MIMAT0030799 Panagrellus redivivus miR-7956-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbn-miR-239d MIMAT0029730 Caenorhabditis brenneri miR-239d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbn-miR-239c MIMAT0029729 Caenorhabditis brenneri miR-239c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbn-miR-239a MIMAT0029728 Caenorhabditis brenneri miR-239a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbn-miR-239b MIMAT0029727 Caenorhabditis brenneri miR-239b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbn-miR-238 MIMAT0029726 Caenorhabditis brenneri miR-238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>crm-miR-2254 MIMAT0029641 Caenorhabditis remanei miR-2254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ghr-miR7484b MIMAT0029125 Gossypium hirsutum miR7484b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ghr-miR7484a MIMAT0029124 Gossypium hirsutum miR7484a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mdo-miR-7371f-5p MIMAT0028784 Monodelphis domestica
miR-7371f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mdo-miR-7371e-5p MIMAT0028782 Monodelphis domestica
miR-7371e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mdo-miR-7371d-5p MIMAT0028780 Monodelphis domestica
miR-7371d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 8 tacaaa 3
>mdo-miR-7371b-5p MIMAT0028774 Monodelphis domestica
miR-7371b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mdo-miR-7371a-5p MIMAT0028772 Monodelphis domestica
miR-7371a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mml-miR-7201-5p MIMAT0028366 Macaca mulatta miR-7201-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 8 tacaaa 3
>mmu-miR-6994-5p MIMAT0027890 Mus musculus miR-6994-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>mmu-miR-6896-5p MIMAT0027692 Mus musculus miR-6896-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>hsa-miR-6844 MIMAT0027589 Homo sapiens miR-6844
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>ptc-miR6450a MIMAT0025254 Populus trichocarpa miR6450a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 6 acaaag 1
>ptr-miR-3149 MIMAT0024056 Pan troglodytes miR-3149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ath-miR4245 MIMAT0023523 Arabidopsis thaliana miR4245
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>hco-miR-5893 MIMAT0023332 Haemonchus contortus miR-5893
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 1 tacaaa 6
>mtr-miR5748 MIMAT0023128 Medicago truncatula miR5748
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>tur-miR-305-5p MIMAT0023114 Tetranychus urticae miR-305-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>osa-miR5513 MIMAT0022146 Oryza sativa miR5513
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 3 acaaag 8
>asu-miR-239-5p MIMAT0021521 Ascaris suum miR-239-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mtr-miR5260 MIMAT0021260 Medicago truncatula miR5260
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>mtr-miR5226 MIMAT0021184 Medicago truncatula miR5226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>dme-miR-4967-3p MIMAT0020193 Drosophila melanogaster
miR-4967-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 3 acaaag 8
>cel-miR-4936 MIMAT0020142 Caenorhabditis elegans miR-4936
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>bfl-miR-4874-5p MIMAT0020453 Branchiostoma floridae miR-4874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 8 tacaaa 3
>hsa-miR-3973 MIMAT0019358 Homo sapiens miR-3973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>ath-miR3932b-3p MIMAT0018347 Arabidopsis thaliana miR3932b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>ath-miR3932a MIMAT0018346 Arabidopsis thaliana miR3932a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>dpu-miR-305 MIMAT0018924 Daphnia pulex miR-305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>aly-miR4245 MIMAT0017934 Arabidopsis lyrata miR4245
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>cin-miR-4164-3p MIMAT0016772 Ciona intestinalis miR-4164-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 7 acaaag 2
>cin-miR-4024-5p MIMAT0016539 Ciona intestinalis miR-4024-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cin-miR-4006c-3p MIMAT0016475 Ciona intestinalis miR-4006c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>ppy-miR-1283a MIMAT0016204 Pongo pygmaeus miR-1283a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 3 tacaaa 8
>ppy-miR-520h MIMAT0015976 Pongo pygmaeus miR-520h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>ppy-miR-520g MIMAT0015975 Pongo pygmaeus miR-520g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>aly-miR158a-5p MIMAT0017421 Arabidopsis lyrata miR158a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 6 acaaag 1
>bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>hsa-miR-3149 MIMAT0015022 Homo sapiens miR-3149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>bmo-miR-2831 MIMAT0013744 Bombyx mori miR-2831
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 1 tacaaa 6
>bmo-miR-2814 MIMAT0013723 Bombyx mori miR-2814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 1 tacaaa 6
>bta-miR-2479 MIMAT0012071 Bos taurus miR-2479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 8 tacaaa 3
>ppc-miR-2254 MIMAT0011676 Pristionchus pacificus miR-2254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ppc-miR-239 MIMAT0011646 Pristionchus pacificus miR-239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>crm-miR-239a-5p MIMAT0011616 Caenorhabditis remanei miR-239a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>crm-miR-239b MIMAT0011536 Caenorhabditis remanei miR-239b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>crm-miR-238 MIMAT0011520 Caenorhabditis remanei miR-238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbr-miR-2223 MIMAT0011492 Caenorhabditis briggsae miR-2223
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cbr-miR-238 MIMAT0011465 Caenorhabditis briggsae miR-238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>osa-miR2099-3p MIMAT0010063 Oryza sativa miR2099-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>ptr-miR-520h MIMAT0008204 Pan troglodytes miR-520h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>ptr-miR-520g MIMAT0008203 Pan troglodytes miR-520g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>ptr-miR-1283a MIMAT0008002 Pan troglodytes miR-1283a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 3 tacaaa 8
>mml-miR-520g MIMAT0006395 Macaca mulatta miR-520g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>mdv2-miR-M26-5p MIMAT0004471 Mareks disease miR-M26-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 8 acaaag 3
>hsa-miR-1283 MIMAT0005799 Homo sapiens miR-1283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaaa 6
||||||
Sbjct: 3 tacaaa 8
>hsa-miR-520h MIMAT0002867 Homo sapiens miR-520h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>hsa-miR-520g-3p MIMAT0002858 Homo sapiens miR-520g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaaag 7
||||||
Sbjct: 1 acaaag 6
>cbr-miR-239a MIMAT0001304 Caenorhabditis briggsae miR-239a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cel-miR-239b-5p MIMAT0000295 Caenorhabditis elegans miR-239b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cel-miR-239a-5p MIMAT0000294 Caenorhabditis elegans miR-239a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>cel-miR-238-3p MIMAT0000293 Caenorhabditis elegans miR-238-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaaa 6
||||||
Sbjct: 6 tacaaa 1
>ath-miR158a-5p MIMAT0031873 Arabidopsis thaliana miR158a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaaag 7
||||||
Sbjct: 6 acaaag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 137
Number of extensions: 120
Number of successful extensions: 98
Number of sequences better than 100.0: 98
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 98
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
