BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR45
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p 14 20
mdo-miR-7390-3p MIMAT0028877 Monodelphis domestica miR-7390-3p 14 20
mdo-miR-7388a-5p MIMAT0028868 Monodelphis domestica miR-7388a-5p 14 20
mdo-miR-1805-5p MIMAT0028690 Monodelphis domestica miR-1805-5p 14 20
gga-miR-6544-3p MIMAT0025592 Gallus gallus miR-6544-3p 14 20
aca-miR-1805-5p MIMAT0021807 Anolis carolinensis miR-1805-5p 14 20
tgu-miR-1805-5p MIMAT0014620 Taeniopygia guttata miR-1805-5p 14 20
gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p 14 20
chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p 12 80
efu-miR-9353 MIMAT0035140 Eptesicus fuscus miR-9353 12 80
pxy-miR-8526 MIMAT0033768 Plutella xylostella miR-8526 12 80
ppc-miR-8339-5p MIMAT0033223 Pristionchus pacificus miR-8339-5p 12 80
ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p 12 80
prd-miR-7899-5p MIMAT0030594 Panagrellus redivivus miR-7899-5p 12 80
lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p 12 80
pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p 12 80
ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b 12 80
gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p 12 80
mdo-miR-7262a-3p MIMAT0028491 Monodelphis domestica miR-7262a-3p 12 80
mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p 12 80
sbi-miR5568d-3p MIMAT0026423 Sorghum bicolor miR5568d-3p 12 80
pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p 12 80
bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p 12 80
cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382 12 80
stu-miR6026-5p MIMAT0031164 Solanum tuberosum miR6026-5p 12 80
tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p 12 80
osa-miR5485 MIMAT0022118 Oryza sativa miR5485 12 80
aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b 12 80
aca-miR-98-3p MIMAT0021995 Anolis carolinensis miR-98-3p 12 80
aca-miR-187-5p MIMAT0021815 Anolis carolinensis miR-187-5p 12 80
osa-miR5147 MIMAT0021092 Oryza sativa miR5147 12 80
oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p 12 80
tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p 12 80
cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p 12 80
cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p 12 80
ppy-miR-549 MIMAT0015996 Pongo pygmaeus miR-549 12 80
ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382 12 80
bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p 12 80
mmu-miR-669p-5p MIMAT0014889 Mus musculus miR-669p-5p 12 80
tgu-miR-187-5p MIMAT0027004 Taeniopygia guttata miR-187-5p 12 80
rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus miR-rL1... 12 80
eca-miR-382 MIMAT0013150 Equus caballus miR-382 12 80
mtr-miR2608 MIMAT0013314 Medicago truncatula miR2608 12 80
sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p 12 80
sma-let-7-3p MIMAT0032102 Schistosoma mansoni let-7-3p 12 80
ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p 12 80
mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p 12 80
spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus miR-2009 12 80
mmu-miR-669o-5p MIMAT0009421 Mus musculus miR-669o-5p 12 80
mmu-miR-669l-5p MIMAT0009418 Mus musculus miR-669l-5p 12 80
bta-miR-382 MIMAT0009308 Bos taurus miR-382 12 80
ptr-miR-549 MIMAT0008229 Pan troglodytes miR-549 12 80
ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382 12 80
mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p 12 80
oan-miR-187-5p MIMAT0007266 Ornithorhynchus anatinus miR-187-5p 12 80
mmu-miR-669f-5p MIMAT0017327 Mus musculus miR-669f-5p 12 80
mdv1-miR-M2-5p MIMAT0003921 Mareks disease miR-M2-5p 12 80
mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p 12 80
mmu-miR-669a-5p MIMAT0003477 Mus musculus miR-669a-5p 12 80
hsa-miR-549a MIMAT0003333 Homo sapiens miR-549a 12 80
rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p 12 80
dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p 12 80
rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p 12 80
mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p 12 80
hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p 12 80
>oha-miR-1805-5p MIMAT0036755 Ophiophagus hannah miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 8 tacaact 2
>mdo-miR-7390-3p MIMAT0028877 Monodelphis domestica miR-7390-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 8 tacaact 2
>mdo-miR-7388a-5p MIMAT0028868 Monodelphis domestica
miR-7388a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 7 tacaact 1
>mdo-miR-1805-5p MIMAT0028690 Monodelphis domestica miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 7 tacaact 1
>gga-miR-6544-3p MIMAT0025592 Gallus gallus miR-6544-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 8 tacaact 2
>aca-miR-1805-5p MIMAT0021807 Anolis carolinensis miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 7 tacaact 1
>tgu-miR-1805-5p MIMAT0014620 Taeniopygia guttata miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 7 tacaact 1
>gga-miR-1805-5p MIMAT0007722 Gallus gallus miR-1805-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacaact 7
|||||||
Sbjct: 8 tacaact 2
>chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>efu-miR-9353 MIMAT0035140 Eptesicus fuscus miR-9353
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaac 6
||||||
Sbjct: 8 tacaac 3
>pxy-miR-8526 MIMAT0033768 Plutella xylostella miR-8526
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 1 tacaac 6
>ppc-miR-8339-5p MIMAT0033223 Pristionchus pacificus miR-8339-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>ssa-miR-219c-2-3p MIMAT0032532 Salmo salar miR-219c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>prd-miR-7899-5p MIMAT0030594 Panagrellus redivivus miR-7899-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>lva-miR-2009-3p MIMAT0032230 Lytechinus variegatus miR-2009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>pmi-miR-2009-3p MIMAT0032183 Patiria miniata miR-2009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>ipu-miR-219b MIMAT0029475 Ictalurus punctatus miR-219b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>gga-miR-7438-3p MIMAT0029031 Gallus gallus miR-7438-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mdo-miR-7262a-3p MIMAT0028491 Monodelphis domestica
miR-7262a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 1 tacaac 6
>mml-miR-4703-3p MIMAT0028279 Macaca mulatta miR-4703-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>sbi-miR5568d-3p MIMAT0026423 Sorghum bicolor miR5568d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>pol-miR-219-3p MIMAT0025447 Paralichthys olivaceus miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>stu-miR6026-5p MIMAT0031164 Solanum tuberosum miR6026-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>tur-miR-210-5p MIMAT0023070 Tetranychus urticae miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>osa-miR5485 MIMAT0022118 Oryza sativa miR5485
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 3 acaact 8
>aca-miR-5408b MIMAT0022073 Anolis carolinensis miR-5408b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 1 acaact 6
>aca-miR-98-3p MIMAT0021995 Anolis carolinensis miR-98-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>aca-miR-187-5p MIMAT0021815 Anolis carolinensis miR-187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>osa-miR5147 MIMAT0021092 Oryza sativa miR5147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 1 acaact 6
>oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>tca-miR-3843-5p MIMAT0018732 Tribolium castaneum miR-3843-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>cin-miR-4114-5p MIMAT0016704 Ciona intestinalis miR-4114-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>cin-miR-4023-3p MIMAT0016538 Ciona intestinalis miR-4023-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>ppy-miR-549 MIMAT0015996 Pongo pygmaeus miR-549
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 3 acaact 8
>ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>bmo-miR-2733i-5p MIMAT0015591 Bombyx mori miR-2733i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>mmu-miR-669p-5p MIMAT0014889 Mus musculus miR-669p-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>tgu-miR-187-5p MIMAT0027004 Taeniopygia guttata miR-187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>rlcv-miR-rL1-23-3p MIMAT0016946 Rhesus lymphocryptovirus
miR-rL1-23-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>eca-miR-382 MIMAT0013150 Equus caballus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mtr-miR2608 MIMAT0013314 Medicago truncatula miR2608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaac 6
||||||
Sbjct: 6 tacaac 1
>sme-miR-2173-5p MIMAT0012164 Schmidtea mediterranea miR-2173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 2 acaact 7
>sma-let-7-3p MIMAT0032102 Schistosoma mansoni let-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>ebv-miR-BART21-3p MIMAT0010131 Epstein Barr miR-BART21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>spu-miR-2009 MIMAT0009750 Strongylocentrotus purpuratus
miR-2009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mmu-miR-669o-5p MIMAT0009421 Mus musculus miR-669o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 7 acaact 2
>mmu-miR-669l-5p MIMAT0009418 Mus musculus miR-669l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>bta-miR-382 MIMAT0009308 Bos taurus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>ptr-miR-549 MIMAT0008229 Pan troglodytes miR-549
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 3 acaact 8
>ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>oan-miR-187-5p MIMAT0007266 Ornithorhynchus anatinus miR-187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacaac 6
||||||
Sbjct: 3 tacaac 8
>mmu-miR-669f-5p MIMAT0017327 Mus musculus miR-669f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>mdv1-miR-M2-5p MIMAT0003921 Mareks disease miR-M2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacaac 6
||||||
Sbjct: 6 tacaac 1
>mmu-miR-669c-5p MIMAT0003479 Mus musculus miR-669c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mmu-miR-669a-5p MIMAT0003477 Mus musculus miR-669a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 6 acaact 1
>hsa-miR-549a MIMAT0003333 Homo sapiens miR-549a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acaact 7
||||||
Sbjct: 3 acaact 8
>rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>dre-miR-219-3p MIMAT0031989 Danio rerio miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
>hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acaact 7
||||||
Sbjct: 8 acaact 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 86
Number of extensions: 78
Number of successful extensions: 65
Number of sequences better than 100.0: 65
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 65
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
