BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-12
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9399-3p MIMAT0035345 Gyrodactylus salaris miR-9399-3p 14 20
ppe-miR6294 MIMAT0027330 Prunus persica miR6294 14 20
cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711 14 20
ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p 12 80
dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p 12 80
efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257 12 80
eca-miR-8986b MIMAT0034532 Equus caballus miR-8986b 12 80
eca-miR-8948 MIMAT0034477 Equus caballus miR-8948 12 80
gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782 12 80
ppe-miR3627-3p MIMAT0031535 Prunus persica miR3627-3p 12 80
hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978 12 80
prd-miR-7911c-3p MIMAT0030563 Panagrellus redivivus miR-7911c-3p 12 80
gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p 12 80
mdo-miR-7395-5p MIMAT0028888 Monodelphis domestica miR-7395-5p 12 80
mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p 12 80
hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p 12 80
gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p 12 80
tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789 12 80
hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971 12 80
osa-miR5530 MIMAT0022165 Oryza sativa miR5530 12 80
mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228 12 80
ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015 12 80
dme-miR-4965-3p MIMAT0020189 Drosophila melanogaster miR-4965-3p 12 80
dme-miR-4949-3p MIMAT0020161 Drosophila melanogaster miR-4949-3p 12 80
hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p 12 80
tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p 12 80
tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p 12 80
mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus miR-M1-12-3p 12 80
ame-miR-971 MIMAT0018544 Apis mellifera miR-971 12 80
vvi-miR2950-3p MIMAT0018010 Vitis vinifera miR2950-3p 12 80
cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p 12 80
cin-miR-4175-3p MIMAT0016784 Ciona intestinalis miR-4175-3p 12 80
rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576 12 80
rno-miR-1188-5p MIMAT0017854 Rattus norvegicus miR-1188-5p 12 80
api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971 12 80
cqu-miR-2941-1-5p MIMAT0014434 Culex quinquefasciatus miR-2941-1-5p 12 80
ghr-miR2950 MIMAT0014348 Gossypium hirsutum miR2950 12 80
rlcv-miR-rL1-26-5p MIMAT0019191 Rhesus lymphocryptovirus miR-rL1... 12 80
dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura miR-2548-3p 12 80
dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p 12 80
gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789 12 80
mdo-miR-1541 MIMAT0006140 Monodelphis domestica miR-1541 12 80
gga-miR-1467-3p MIMAT0007346 Gallus gallus miR-1467-3p 12 80
mmu-miR-1188-5p MIMAT0005843 Mus musculus miR-1188-5p 12 80
dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p 12 80
ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2 12 80
hsv1-miR-H1-3p MIMAT0015220 Herpes Simplex miR-H1-3p 12 80
mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p 12 80
kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated miR-K12-10b 12 80
hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p 12 80
>gsa-miR-9399-3p MIMAT0035345 Gyrodactylus salaris miR-9399-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacacca 7
|||||||
Sbjct: 7 tacacca 1
>ppe-miR6294 MIMAT0027330 Prunus persica miR6294
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacacca 7
|||||||
Sbjct: 7 tacacca 1
>cte-miR-2711 MIMAT0013580 Capitella teleta miR-2711
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacacca 7
|||||||
Sbjct: 8 tacacca 2
>ata-miR1432-3p MIMAT0037215 Aegilops tauschii miR1432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>dvi-miR-971-3p MIMAT0035592 Drosophila virilis miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>efu-miR-9257 MIMAT0034876 Eptesicus fuscus miR-9257
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>eca-miR-8986b MIMAT0034532 Equus caballus miR-8986b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>eca-miR-8948 MIMAT0034477 Equus caballus miR-8948
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>gra-miR8782 MIMAT0034232 Gossypium raimondii miR8782
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>ppe-miR3627-3p MIMAT0031535 Prunus persica miR3627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>prd-miR-7911c-3p MIMAT0030563 Panagrellus redivivus
miR-7911c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>gga-miR-7440-3p MIMAT0029035 Gallus gallus miR-7440-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>mdo-miR-7395-5p MIMAT0028888 Monodelphis domestica miR-7395-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacacc 6
||||||
Sbjct: 1 tacacc 6
>mdo-miR-7324-5p MIMAT0028648 Monodelphis domestica miR-7324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>hsa-miR-6772-5p MIMAT0027444 Homo sapiens miR-6772-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacacc 6
||||||
Sbjct: 8 tacacc 3
>gga-miR-6652-5p MIMAT0025752 Gallus gallus miR-6652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacacc 6
||||||
Sbjct: 8 tacacc 3
>tgu-miR-1789 MIMAT0025408 Taeniopygia guttata miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacacc 6
||||||
Sbjct: 8 tacacc 3
>hme-miR-971 MIMAT0024998 Heliconius melpomene miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>osa-miR5530 MIMAT0022165 Oryza sativa miR5530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>ath-miR5015 MIMAT0020519 Arabidopsis thaliana miR5015
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>dme-miR-4965-3p MIMAT0020189 Drosophila melanogaster
miR-4965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>dme-miR-4949-3p MIMAT0020161 Drosophila melanogaster
miR-4949-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacacc 6
||||||
Sbjct: 1 tacacc 6
>tca-miR-3832-3p MIMAT0018695 Tribolium castaneum miR-3832-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 1 acacca 6
>mghv-miR-M1-12-3p MIMAT0018171 Mouse gammaherpesvirus
miR-M1-12-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>ame-miR-971 MIMAT0018544 Apis mellifera miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>vvi-miR2950-3p MIMAT0018010 Vitis vinifera miR2950-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>cin-miR-4187-5p MIMAT0016805 Ciona intestinalis miR-4187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>cin-miR-4175-3p MIMAT0016784 Ciona intestinalis miR-4175-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacacc 6
||||||
Sbjct: 6 tacacc 1
>rno-miR-3576 MIMAT0017862 Rattus norvegicus miR-3576
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>rno-miR-1188-5p MIMAT0017854 Rattus norvegicus miR-1188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>api-miR-971 MIMAT0014745 Acyrthosiphon pisum miR-971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>cqu-miR-2941-1-5p MIMAT0014434 Culex quinquefasciatus
miR-2941-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>ghr-miR2950 MIMAT0014348 Gossypium hirsutum miR2950
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>rlcv-miR-rL1-26-5p MIMAT0019191 Rhesus lymphocryptovirus
miR-rL1-26-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacacc 6
||||||
Sbjct: 3 tacacc 8
>dps-miR-2548-3p MIMAT0012357 Drosophila pseudoobscura
miR-2548-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>dps-miR-971-3p MIMAT0012226 Drosophila pseudoobscura miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>gga-miR-1789 MIMAT0007702 Gallus gallus miR-1789
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacacc 6
||||||
Sbjct: 8 tacacc 3
>mdo-miR-1541 MIMAT0006140 Monodelphis domestica miR-1541
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>gga-miR-1467-3p MIMAT0007346 Gallus gallus miR-1467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>mmu-miR-1188-5p MIMAT0005843 Mus musculus miR-1188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>dme-miR-971-3p MIMAT0005487 Drosophila melanogaster miR-971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 7 acacca 2
>ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 8 acacca 3
>hsv1-miR-H1-3p MIMAT0015220 Herpes Simplex miR-H1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacacc 6
||||||
Sbjct: 1 tacacc 6
>mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
>kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated
miR-K12-10b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacca 7
||||||
Sbjct: 6 acacca 1
>hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacca 7
||||||
Sbjct: 3 acacca 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 54
Number of successful extensions: 50
Number of sequences better than 100.0: 50
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 50
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
