BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-214-3p MIMAT0036059 Capra hircus miR-214-3p 14 20
efu-miR-214 MIMAT0035078 Eptesicus fuscus miR-214 14 20
cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875 14 20
ssa-miR-214-3p MIMAT0032515 Salmo salar miR-214-3p 14 20
ccr-miR-214 MIMAT0026269 Cyprinus carpio miR-214 14 20
cgr-miR-214-3p MIMAT0023852 Cricetulus griseus miR-214-3p 14 20
ola-miR-214 MIMAT0022640 Oryzias latipes miR-214 14 20
hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p 14 20
hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p 14 20
pma-miR-4545-3p MIMAT0019576 Petromyzon marinus miR-4545-3p 14 20
gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p 14 20
oha-miR-383-3p MIMAT0036920 Ophiophagus hannah miR-383-3p 12 80
chi-miR-21-3p MIMAT0036062 Capra hircus miR-21-3p 12 80
sly-miR9473-5p MIMAT0035461 Solanum lycopersicum miR9473-5p 12 80
efu-miR-21 MIMAT0035146 Eptesicus fuscus miR-21 12 80
efu-miR-9212 MIMAT0034803 Eptesicus fuscus miR-9212 12 80
efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c 12 80
eca-miR-9046 MIMAT0034590 Equus caballus miR-9046 12 80
cfa-miR-8904b MIMAT0034424 Canis familiaris miR-8904b 12 80
cfa-miR-8799f MIMAT0034372 Canis familiaris miR-8799f 12 80
cfa-miR-8842 MIMAT0034335 Canis familiaris miR-8842 12 80
cfa-miR-8799b MIMAT0034316 Canis familiaris miR-8799b 12 80
esi-miR8629 MIMAT0033967 Ectocarpus siliculosus miR8629 12 80
ppc-miR-8346-3p MIMAT0033239 Pristionchus pacificus miR-8346-3p 12 80
bbe-miR-4928-3p MIMAT0031713 Branchiostoma belcheri miR-4928-3p 12 80
prd-miR-7970-5p MIMAT0030842 Panagrellus redivivus miR-7970-5p 12 80
mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p 12 80
mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p 12 80
ipu-miR-214 MIMAT0029466 Ictalurus punctatus miR-214 12 80
aja-miR-214 MIMAT0031144 Artibeus jamaicensis miR-214 12 80
aja-miR-21 MIMAT0031140 Artibeus jamaicensis miR-21 12 80
mdo-miR-7389-5p MIMAT0028870 Monodelphis domestica miR-7389-5p 12 80
mml-miR-4766-3p MIMAT0028239 Macaca mulatta miR-4766-3p 12 80
mmu-miR-6966-3p MIMAT0027835 Mus musculus miR-6966-3p 12 80
mmu-miR-6937-5p MIMAT0027774 Mus musculus miR-6937-5p 12 80
hsa-miR-6856-3p MIMAT0027613 Homo sapiens miR-6856-3p 12 80
gga-miR-6663-5p MIMAT0025764 Gallus gallus miR-6663-5p 12 80
gga-miR-6554-3p MIMAT0025616 Gallus gallus miR-6554-3p 12 80
ppe-miR6272 MIMAT0027298 Prunus persica miR6272 12 80
aca-miR-214-3p MIMAT0021872 Anolis carolinensis miR-214-3p 12 80
rmi-miR-5335 MIMAT0021408 Rhipicephalus microplus miR-5335 12 80
bdi-miR529-3p MIMAT0027097 Brachypodium distachyon miR529-3p 12 80
bfl-miR-4928 MIMAT0020117 Branchiostoma floridae miR-4928 12 80
pma-miR-4625 MIMAT0019659 Petromyzon marinus miR-4625 12 80
pma-miR-196a-3p MIMAT0019503 Petromyzon marinus miR-196a-3p 12 80
tca-miR-3898-5p MIMAT0018900 Tribolium castaneum miR-3898-5p 12 80
tca-miR-3874-5p MIMAT0018840 Tribolium castaneum miR-3874-5p 12 80
ssc-miR-383 MIMAT0017972 Sus scrofa miR-383 12 80
cin-miR-4085-3p MIMAT0016660 Ciona intestinalis miR-4085-3p 12 80
cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p 12 80
cin-miR-4017-5p MIMAT0016524 Ciona intestinalis miR-4017-5p 12 80
tgu-miR-214-3p MIMAT0014603 Taeniopygia guttata miR-214-3p 12 80
tgu-miR-383-3p MIMAT0026989 Taeniopygia guttata miR-383-3p 12 80
zma-miR529-3p MIMAT0015364 Zea mays miR529-3p 12 80
ssc-miR-196b-3p MIMAT0017379 Sus scrofa miR-196b-3p 12 80
eca-miR-214 MIMAT0012963 Equus caballus miR-214 12 80
dps-miR-2539-3p MIMAT0012335 Drosophila pseudoobscura miR-2539-3p 12 80
dps-miR-971-5p MIMAT0012225 Drosophila pseudoobscura miR-971-5p 12 80
bta-miR-2334 MIMAT0011867 Bos taurus miR-2334 12 80
cel-miR-2215-5p MIMAT0011445 Caenorhabditis elegans miR-2215-5p 12 80
cel-miR-2213-3p MIMAT0011442 Caenorhabditis elegans miR-2213-3p 12 80
sme-miR-2181 MIMAT0011284 Schmidtea mediterranea miR-2181 12 80
cfa-miR-214 MIMAT0009847 Canis familiaris miR-214 12 80
aqu-miR-2016-3p MIMAT0009691 Amphimedon queenslandica miR-2016-3p 12 80
gga-miR-214 MIMAT0007751 Gallus gallus miR-214 12 80
mml-miR-196b-3p MIMAT0026840 Macaca mulatta miR-196b-3p 12 80
gga-miR-1704 MIMAT0007596 Gallus gallus miR-1704 12 80
gga-miR-1668-3p MIMAT0007552 Gallus gallus miR-1668-3p 12 80
gga-miR-1629 MIMAT0007500 Gallus gallus miR-1629 12 80
odi-miR-1501 MIMAT0006061 Oikopleura dioica miR-1501 12 80
gga-miR-1464 MIMAT0007342 Gallus gallus miR-1464 12 80
oan-miR-214-3p MIMAT0007171 Ornithorhynchus anatinus miR-214-3p 12 80
oan-miR-21-3p MIMAT0007161 Ornithorhynchus anatinus miR-21-3p 12 80
oan-miR-196b-3p MIMAT0007140 Ornithorhynchus anatinus miR-196b-3p 12 80
oan-miR-1340-3p MIMAT0006869 Ornithorhynchus anatinus miR-1340-3p 12 80
dme-miR-971-5p MIMAT0020868 Drosophila melanogaster miR-971-5p 12 80
cgr-miR-21-3p MIMAT0022937 Cricetulus griseus miR-21-3p 12 80
ppt-miR898a-5p MIMAT0004382 Physcomitrella patens miR898a-5p 12 80
ppt-miR898b MIMAT0004381 Physcomitrella patens miR898b 12 80
mdo-miR-214-3p MIMAT0004130 Monodelphis domestica miR-214-3p 12 80
bta-miR-214 MIMAT0003825 Bos taurus miR-214 12 80
xtr-miR-214 MIMAT0003627 Xenopus tropicalis miR-214 12 80
mmu-miR-683 MIMAT0003461 Mus musculus miR-683 12 80
gga-miR-383-3p MIMAT0026631 Gallus gallus miR-383-3p 12 80
rno-miR-383-3p MIMAT0017197 Rattus norvegicus miR-383-3p 12 80
tni-miR-214 MIMAT0003027 Tetraodon nigroviridis miR-214 12 80
fru-miR-214 MIMAT0003026 Fugu rubripes miR-214 12 80
mne-miR-214 MIMAT0002557 Macaca nemestrina miR-214 12 80
sla-miR-214 MIMAT0002556 Saguinus labiatus miR-214 12 80
mml-miR-214-3p MIMAT0002555 Macaca mulatta miR-214-3p 12 80
ptr-miR-214 MIMAT0002554 Pan troglodytes miR-214 12 80
ppy-miR-214 MIMAT0002553 Pongo pygmaeus miR-214 12 80
ppa-miR-214 MIMAT0002552 Pan paniscus miR-214 12 80
age-miR-214 MIMAT0002551 Ateles geoffroyi miR-214 12 80
ggo-miR-214 MIMAT0002550 Gorilla gorilla miR-214 12 80
ssc-miR-214 MIMAT0002147 Sus scrofa miR-214 12 80
dre-miR-214 MIMAT0001283 Danio rerio miR-214 12 80
rno-miR-214-3p MIMAT0000885 Rattus norvegicus miR-214-3p 12 80
rno-miR-21-3p MIMAT0004711 Rattus norvegicus miR-21-3p 12 80
mmu-miR-383-3p MIMAT0017082 Mus musculus miR-383-3p 12 80
hsa-miR-383-3p MIMAT0026485 Homo sapiens miR-383-3p 12 80
mmu-miR-214-3p MIMAT0000661 Mus musculus miR-214-3p 12 80
mmu-miR-21a-3p MIMAT0004628 Mus musculus miR-21a-3p 12 80
hsa-miR-214-3p MIMAT0000271 Homo sapiens miR-214-3p 12 80
>chi-miR-214-3p MIMAT0036059 Capra hircus miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>efu-miR-214 MIMAT0035078 Eptesicus fuscus miR-214
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>cfa-miR-8875 MIMAT0034375 Canis familiaris miR-8875
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacagca 7
|||||||
Sbjct: 7 tacagca 1
>ssa-miR-214-3p MIMAT0032515 Salmo salar miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>ccr-miR-214 MIMAT0026269 Cyprinus carpio miR-214
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>cgr-miR-214-3p MIMAT0023852 Cricetulus griseus miR-214-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>ola-miR-214 MIMAT0022640 Oryzias latipes miR-214
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 2 tacagca 8
>hvsa-miR-HSUR5-3p MIMAT0022683 Herpesvirus saimiri miR-HSUR5-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 2 tacagca 8
>hsa-miR-4999-5p MIMAT0021017 Homo sapiens miR-4999-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacagca 7
|||||||
Sbjct: 7 tacagca 1
>pma-miR-4545-3p MIMAT0019576 Petromyzon marinus miR-4545-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 1 tacagca 7
>gga-miR-196-2-3p MIMAT0026504 Gallus gallus miR-196-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacagca 7
|||||||
Sbjct: 2 tacagca 8
>oha-miR-383-3p MIMAT0036920 Ophiophagus hannah miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>chi-miR-21-3p MIMAT0036062 Capra hircus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>sly-miR9473-5p MIMAT0035461 Solanum lycopersicum miR9473-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 8 tacagc 3
>efu-miR-21 MIMAT0035146 Eptesicus fuscus miR-21
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>efu-miR-9212 MIMAT0034803 Eptesicus fuscus miR-9212
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>eca-miR-9046 MIMAT0034590 Equus caballus miR-9046
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>cfa-miR-8904b MIMAT0034424 Canis familiaris miR-8904b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>cfa-miR-8799f MIMAT0034372 Canis familiaris miR-8799f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>cfa-miR-8842 MIMAT0034335 Canis familiaris miR-8842
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>cfa-miR-8799b MIMAT0034316 Canis familiaris miR-8799b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>esi-miR8629 MIMAT0033967 Ectocarpus siliculosus miR8629
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>ppc-miR-8346-3p MIMAT0033239 Pristionchus pacificus miR-8346-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 8 tacagc 3
>bbe-miR-4928-3p MIMAT0031713 Branchiostoma belcheri miR-4928-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>prd-miR-7970-5p MIMAT0030842 Panagrellus redivivus miR-7970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>ipu-miR-214 MIMAT0029466 Ictalurus punctatus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>aja-miR-214 MIMAT0031144 Artibeus jamaicensis miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>aja-miR-21 MIMAT0031140 Artibeus jamaicensis miR-21
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>mdo-miR-7389-5p MIMAT0028870 Monodelphis domestica miR-7389-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>mml-miR-4766-3p MIMAT0028239 Macaca mulatta miR-4766-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mmu-miR-6966-3p MIMAT0027835 Mus musculus miR-6966-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>mmu-miR-6937-5p MIMAT0027774 Mus musculus miR-6937-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 8 tacagc 3
>hsa-miR-6856-3p MIMAT0027613 Homo sapiens miR-6856-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacagc 6
||||||
Sbjct: 1 tacagc 6
>gga-miR-6663-5p MIMAT0025764 Gallus gallus miR-6663-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>gga-miR-6554-3p MIMAT0025616 Gallus gallus miR-6554-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>ppe-miR6272 MIMAT0027298 Prunus persica miR6272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 8 tacagc 3
>aca-miR-214-3p MIMAT0021872 Anolis carolinensis miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>rmi-miR-5335 MIMAT0021408 Rhipicephalus microplus miR-5335
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 7 acagca 2
>bdi-miR529-3p MIMAT0027097 Brachypodium distachyon miR529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>bfl-miR-4928 MIMAT0020117 Branchiostoma floridae miR-4928
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>pma-miR-4625 MIMAT0019659 Petromyzon marinus miR-4625
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>pma-miR-196a-3p MIMAT0019503 Petromyzon marinus miR-196a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>tca-miR-3898-5p MIMAT0018900 Tribolium castaneum miR-3898-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>tca-miR-3874-5p MIMAT0018840 Tribolium castaneum miR-3874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>ssc-miR-383 MIMAT0017972 Sus scrofa miR-383
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>cin-miR-4085-3p MIMAT0016660 Ciona intestinalis miR-4085-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>cin-miR-4017-5p MIMAT0016524 Ciona intestinalis miR-4017-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>tgu-miR-214-3p MIMAT0014603 Taeniopygia guttata miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>tgu-miR-383-3p MIMAT0026989 Taeniopygia guttata miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>zma-miR529-3p MIMAT0015364 Zea mays miR529-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>ssc-miR-196b-3p MIMAT0017379 Sus scrofa miR-196b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>eca-miR-214 MIMAT0012963 Equus caballus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>dps-miR-2539-3p MIMAT0012335 Drosophila pseudoobscura
miR-2539-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacagc 6
||||||
Sbjct: 3 tacagc 8
>dps-miR-971-5p MIMAT0012225 Drosophila pseudoobscura miR-971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>bta-miR-2334 MIMAT0011867 Bos taurus miR-2334
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>cel-miR-2215-5p MIMAT0011445 Caenorhabditis elegans miR-2215-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>cel-miR-2213-3p MIMAT0011442 Caenorhabditis elegans miR-2213-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 8 tacagc 3
>sme-miR-2181 MIMAT0011284 Schmidtea mediterranea miR-2181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>cfa-miR-214 MIMAT0009847 Canis familiaris miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>aqu-miR-2016-3p MIMAT0009691 Amphimedon queenslandica
miR-2016-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>gga-miR-214 MIMAT0007751 Gallus gallus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mml-miR-196b-3p MIMAT0026840 Macaca mulatta miR-196b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>gga-miR-1704 MIMAT0007596 Gallus gallus miR-1704
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>gga-miR-1668-3p MIMAT0007552 Gallus gallus miR-1668-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>gga-miR-1629 MIMAT0007500 Gallus gallus miR-1629
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>odi-miR-1501 MIMAT0006061 Oikopleura dioica miR-1501
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>gga-miR-1464 MIMAT0007342 Gallus gallus miR-1464
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>oan-miR-214-3p MIMAT0007171 Ornithorhynchus anatinus miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>oan-miR-21-3p MIMAT0007161 Ornithorhynchus anatinus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>oan-miR-196b-3p MIMAT0007140 Ornithorhynchus anatinus
miR-196b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>oan-miR-1340-3p MIMAT0006869 Ornithorhynchus anatinus
miR-1340-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 6 acagca 1
>dme-miR-971-5p MIMAT0020868 Drosophila melanogaster miR-971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacagc 6
||||||
Sbjct: 6 tacagc 1
>cgr-miR-21-3p MIMAT0022937 Cricetulus griseus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>ppt-miR898a-5p MIMAT0004382 Physcomitrella patens miR898a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 7 acagca 2
>ppt-miR898b MIMAT0004381 Physcomitrella patens miR898b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 7 acagca 2
>mdo-miR-214-3p MIMAT0004130 Monodelphis domestica miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>bta-miR-214 MIMAT0003825 Bos taurus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>xtr-miR-214 MIMAT0003627 Xenopus tropicalis miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mmu-miR-683 MIMAT0003461 Mus musculus miR-683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acagca 7
||||||
Sbjct: 8 acagca 3
>gga-miR-383-3p MIMAT0026631 Gallus gallus miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>rno-miR-383-3p MIMAT0017197 Rattus norvegicus miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>tni-miR-214 MIMAT0003027 Tetraodon nigroviridis miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>fru-miR-214 MIMAT0003026 Fugu rubripes miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mne-miR-214 MIMAT0002557 Macaca nemestrina miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>sla-miR-214 MIMAT0002556 Saguinus labiatus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mml-miR-214-3p MIMAT0002555 Macaca mulatta miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>ptr-miR-214 MIMAT0002554 Pan troglodytes miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>ppy-miR-214 MIMAT0002553 Pongo pygmaeus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>ppa-miR-214 MIMAT0002552 Pan paniscus miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>age-miR-214 MIMAT0002551 Ateles geoffroyi miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>ggo-miR-214 MIMAT0002550 Gorilla gorilla miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>ssc-miR-214 MIMAT0002147 Sus scrofa miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>dre-miR-214 MIMAT0001283 Danio rerio miR-214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>rno-miR-214-3p MIMAT0000885 Rattus norvegicus miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>rno-miR-21-3p MIMAT0004711 Rattus norvegicus miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>mmu-miR-383-3p MIMAT0017082 Mus musculus miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>hsa-miR-383-3p MIMAT0026485 Homo sapiens miR-383-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mmu-miR-214-3p MIMAT0000661 Mus musculus miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
>mmu-miR-21a-3p MIMAT0004628 Mus musculus miR-21a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 3 acagca 8
>hsa-miR-214-3p MIMAT0000271 Homo sapiens miR-214-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acagca 7
||||||
Sbjct: 1 acagca 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 134
Number of extensions: 123
Number of successful extensions: 104
Number of sequences better than 100.0: 104
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 104
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
