BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d22-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8221-5p MIMAT0032876 Pristionchus pacificus miR-8221-5p 14 20
dev-miR-D22-5p MIMAT0028198 Duck enteritis miR-D22-5p 14 20
asu-miR-5354-5p MIMAT0021568 Ascaris suum miR-5354-5p 14 20
gma-miR5671b MIMAT0036348 Glycine max miR5671b 12 80
eca-miR-8908i MIMAT0034719 Equus caballus miR-8908i 12 80
eca-miR-9102 MIMAT0034649 Equus caballus miR-9102 12 80
str-miR-8366b-3p MIMAT0033385 Strongyloides ratti miR-8366b-3p 12 80
str-miR-8366a-3p MIMAT0033307 Strongyloides ratti miR-8366a-3p 12 80
ppc-miR-8310-5p MIMAT0033150 Pristionchus pacificus miR-8310-5p 12 80
ppc-miR-2237d-5p MIMAT0032997 Pristionchus pacificus miR-2237d-5p 12 80
prd-miR-5358b-3p MIMAT0030573 Panagrellus redivivus miR-5358b-3p 12 80
prd-miR-7887-3p MIMAT0030545 Panagrellus redivivus miR-7887-3p 12 80
prd-miR-5358a-3p MIMAT0030535 Panagrellus redivivus miR-5358a-3p 12 80
cbn-miR-51 MIMAT0029690 Caenorhabditis brenneri miR-51 12 80
cbn-miR-56 MIMAT0029689 Caenorhabditis brenneri miR-56 12 80
cbn-miR-55 MIMAT0029688 Caenorhabditis brenneri miR-55 12 80
cbn-miR-54 MIMAT0029687 Caenorhabditis brenneri miR-54 12 80
crm-miR-51 MIMAT0029636 Caenorhabditis remanei miR-51 12 80
crm-miR-56 MIMAT0029635 Caenorhabditis remanei miR-56 12 80
cbr-miR-7595 MIMAT0029602 Caenorhabditis briggsae miR-7595 12 80
lja-miR7516-5p MIMAT0029328 Lotus japonicus miR7516-5p 12 80
hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p 12 80
mmu-miR-6409 MIMAT0025162 Mus musculus miR-6409 12 80
ame-miR-6050 MIMAT0023674 Apis mellifera miR-6050 12 80
hco-miR-55 MIMAT0023441 Haemonchus contortus miR-55 12 80
hco-miR-5899 MIMAT0023344 Haemonchus contortus miR-5899 12 80
hco-miR-5895 MIMAT0023337 Haemonchus contortus miR-5895 12 80
asu-miR-5358b-3p MIMAT0021599 Ascaris suum miR-5358b-3p 12 80
asu-miR-5358a-3p MIMAT0021579 Ascaris suum miR-5358a-3p 12 80
asu-miR-100c-5p MIMAT0021491 Ascaris suum miR-100c-5p 12 80
asu-miR-56 MIMAT0021463 Ascaris suum miR-56 12 80
bdi-miR5068 MIMAT0020577 Brachypodium distachyon miR5068 12 80
ngi-miR-100 MIMAT0018402 Nasonia giraulti miR-100 12 80
cqu-miR-2951-3p MIMAT0014433 Culex quinquefasciatus miR-2951-3p 12 80
bma-miR-100d MIMAT0014115 Brugia malayi miR-100d 12 80
bmo-miR-2855 MIMAT0013790 Bombyx mori miR-2855 12 80
ppc-miR-2237c MIMAT0011728 Pristionchus pacificus miR-2237c 12 80
ppc-miR-56 MIMAT0011717 Pristionchus pacificus miR-56 12 80
ppc-miR-55a MIMAT0011716 Pristionchus pacificus miR-55a 12 80
ppc-miR-2237b MIMAT0011703 Pristionchus pacificus miR-2237b 12 80
ppc-miR-2237a MIMAT0011702 Pristionchus pacificus miR-2237a 12 80
ppc-miR-2262 MIMAT0011688 Pristionchus pacificus miR-2262 12 80
crm-miR-55-3p MIMAT0011552 Caenorhabditis remanei miR-55-3p 12 80
cbr-miR-54d MIMAT0011496 Caenorhabditis briggsae miR-54d 12 80
cbr-miR-54c MIMAT0011495 Caenorhabditis briggsae miR-54c 12 80
cbr-miR-54b MIMAT0011494 Caenorhabditis briggsae miR-54b 12 80
cbr-miR-54a-3p MIMAT0011478 Caenorhabditis briggsae miR-54a-3p 12 80
mml-miR-197-5p MIMAT0026841 Macaca mulatta miR-197-5p 12 80
sme-miR-7c-3p MIMAT0012098 Schmidtea mediterranea miR-7c-3p 12 80
cbr-miR-55 MIMAT0001310 Caenorhabditis briggsae miR-55 12 80
cbr-miR-51 MIMAT0001297 Caenorhabditis briggsae miR-51 12 80
hsa-miR-197-5p MIMAT0022691 Homo sapiens miR-197-5p 12 80
cel-miR-56-3p MIMAT0000028 Caenorhabditis elegans miR-56-3p 12 80
cel-miR-55-3p MIMAT0000026 Caenorhabditis elegans miR-55-3p 12 80
cel-miR-54-3p MIMAT0000025 Caenorhabditis elegans miR-54-3p 12 80
cel-miR-51-5p MIMAT0000022 Caenorhabditis elegans miR-51-5p 12 80
>ppc-miR-8221-5p MIMAT0032876 Pristionchus pacificus miR-8221-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacccgc 7
|||||||
Sbjct: 7 tacccgc 1
>dev-miR-D22-5p MIMAT0028198 Duck enteritis miR-D22-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacccgc 7
|||||||
Sbjct: 2 tacccgc 8
>asu-miR-5354-5p MIMAT0021568 Ascaris suum miR-5354-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacccgc 7
|||||||
Sbjct: 7 tacccgc 1
>gma-miR5671b MIMAT0036348 Glycine max miR5671b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>eca-miR-8908i MIMAT0034719 Equus caballus miR-8908i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>eca-miR-9102 MIMAT0034649 Equus caballus miR-9102
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 6 acccgc 1
>str-miR-8366b-3p MIMAT0033385 Strongyloides ratti miR-8366b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>str-miR-8366a-3p MIMAT0033307 Strongyloides ratti miR-8366a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-8310-5p MIMAT0033150 Pristionchus pacificus miR-8310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 8 acccgc 3
>ppc-miR-2237d-5p MIMAT0032997 Pristionchus pacificus
miR-2237d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>prd-miR-5358b-3p MIMAT0030573 Panagrellus redivivus
miR-5358b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>prd-miR-7887-3p MIMAT0030545 Panagrellus redivivus miR-7887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>prd-miR-5358a-3p MIMAT0030535 Panagrellus redivivus
miR-5358a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbn-miR-51 MIMAT0029690 Caenorhabditis brenneri miR-51
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbn-miR-56 MIMAT0029689 Caenorhabditis brenneri miR-56
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbn-miR-55 MIMAT0029688 Caenorhabditis brenneri miR-55
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbn-miR-54 MIMAT0029687 Caenorhabditis brenneri miR-54
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>crm-miR-51 MIMAT0029636 Caenorhabditis remanei miR-51
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>crm-miR-56 MIMAT0029635 Caenorhabditis remanei miR-56
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-7595 MIMAT0029602 Caenorhabditis briggsae miR-7595
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>lja-miR7516-5p MIMAT0029328 Lotus japonicus miR7516-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 8 acccgc 3
>hsa-miR-7108-3p MIMAT0028114 Homo sapiens miR-7108-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acccgc 7
||||||
Sbjct: 1 acccgc 6
>mmu-miR-6409 MIMAT0025162 Mus musculus miR-6409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 7 acccgc 2
>ame-miR-6050 MIMAT0023674 Apis mellifera miR-6050
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 6 acccgc 1
>hco-miR-55 MIMAT0023441 Haemonchus contortus miR-55
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>hco-miR-5899 MIMAT0023344 Haemonchus contortus miR-5899
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>hco-miR-5895 MIMAT0023337 Haemonchus contortus miR-5895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>asu-miR-5358b-3p MIMAT0021599 Ascaris suum miR-5358b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>asu-miR-5358a-3p MIMAT0021579 Ascaris suum miR-5358a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>asu-miR-100c-5p MIMAT0021491 Ascaris suum miR-100c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>asu-miR-56 MIMAT0021463 Ascaris suum miR-56
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>bdi-miR5068 MIMAT0020577 Brachypodium distachyon miR5068
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacccg 6
||||||
Sbjct: 8 tacccg 3
>ngi-miR-100 MIMAT0018402 Nasonia giraulti miR-100
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cqu-miR-2951-3p MIMAT0014433 Culex quinquefasciatus miR-2951-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acccgc 7
||||||
Sbjct: 1 acccgc 6
>bma-miR-100d MIMAT0014115 Brugia malayi miR-100d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>bmo-miR-2855 MIMAT0013790 Bombyx mori miR-2855
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacccg 6
||||||
Sbjct: 6 tacccg 1
>ppc-miR-2237c MIMAT0011728 Pristionchus pacificus miR-2237c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-56 MIMAT0011717 Pristionchus pacificus miR-56
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-55a MIMAT0011716 Pristionchus pacificus miR-55a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-2237b MIMAT0011703 Pristionchus pacificus miR-2237b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-2237a MIMAT0011702 Pristionchus pacificus miR-2237a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>ppc-miR-2262 MIMAT0011688 Pristionchus pacificus miR-2262
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>crm-miR-55-3p MIMAT0011552 Caenorhabditis remanei miR-55-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-54d MIMAT0011496 Caenorhabditis briggsae miR-54d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-54c MIMAT0011495 Caenorhabditis briggsae miR-54c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-54b MIMAT0011494 Caenorhabditis briggsae miR-54b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-54a-3p MIMAT0011478 Caenorhabditis briggsae miR-54a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>mml-miR-197-5p MIMAT0026841 Macaca mulatta miR-197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacccg 6
||||||
Sbjct: 6 tacccg 1
>sme-miR-7c-3p MIMAT0012098 Schmidtea mediterranea miR-7c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acccgc 7
||||||
Sbjct: 8 acccgc 3
>cbr-miR-55 MIMAT0001310 Caenorhabditis briggsae miR-55
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cbr-miR-51 MIMAT0001297 Caenorhabditis briggsae miR-51
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>hsa-miR-197-5p MIMAT0022691 Homo sapiens miR-197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacccg 6
||||||
Sbjct: 6 tacccg 1
>cel-miR-56-3p MIMAT0000028 Caenorhabditis elegans miR-56-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cel-miR-55-3p MIMAT0000026 Caenorhabditis elegans miR-55-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cel-miR-54-3p MIMAT0000025 Caenorhabditis elegans miR-54-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
>cel-miR-51-5p MIMAT0000022 Caenorhabditis elegans miR-51-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacccg 6
||||||
Sbjct: 1 tacccg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 81
Number of extensions: 78
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
