BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p 14 20
hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088 14 20
hhv6b-miR-Ro6-4-3p MIMAT0026463 Human herpesvirus miR-Ro6-4-3p 14 20
bmo-miR-2774b MIMAT0013661 Bombyx mori miR-2774b 14 20
mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus miR-M23-1-5p 14 20
tch-miR-423-3p MIMAT0036525 Tupaia chinensis miR-423-3p 12 80
chi-miR-423-3p MIMAT0036221 Capra hircus miR-423-3p 12 80
bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p 12 80
gsa-miR-278-3p MIMAT0035295 Gyrodactylus salaris miR-278-3p 12 80
cfa-miR-8791a MIMAT0034281 Canis familiaris miR-8791a 12 80
str-miR-7880m-5p MIMAT0033364 Strongyloides ratti miR-7880m-5p 12 80
ppc-miR-8289-5p MIMAT0033091 Pristionchus pacificus miR-8289-5p 12 80
cbr-miR-7591 MIMAT0029597 Caenorhabditis briggsae miR-7591 12 80
prv-miR-LLT6 MIMAT0025309 Pseudorabies virus miR-LLT6 12 80
cgr-miR-423-3p MIMAT0023957 Cricetulus griseus miR-423-3p 12 80
hhv6b-miR-Ro6-3-3p MIMAT0026461 Human herpesvirus miR-Ro6-3-3p 12 80
tur-miR-276-5p MIMAT0023034 Tetranychus urticae miR-276-5p 12 80
tca-miR-252b-3p MIMAT0018807 Tribolium castaneum miR-252b-3p 12 80
tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p 12 80
ame-miR-3715 MIMAT0018597 Apis mellifera miR-3715 12 80
ppy-miR-423-3p MIMAT0015883 Pongo pygmaeus miR-423-3p 12 80
bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411 12 80
bmo-miR-3360 MIMAT0015546 Bombyx mori miR-3360 12 80
ssc-miR-423-3p MIMAT0013881 Sus scrofa miR-423-3p 12 80
eca-miR-423-3p MIMAT0013040 Equus caballus miR-423-3p 12 80
bmo-miR-2774c MIMAT0013759 Bombyx mori miR-2774c 12 80
bmo-miR-2774a MIMAT0013658 Bombyx mori miR-2774a 12 80
mtr-miR2680e MIMAT0013514 Medicago truncatula miR2680e 12 80
mtr-miR2680d MIMAT0013513 Medicago truncatula miR2680d 12 80
mtr-miR2680c MIMAT0013512 Medicago truncatula miR2680c 12 80
mtr-miR2680b MIMAT0013511 Medicago truncatula miR2680b 12 80
mtr-miR2680a MIMAT0013510 Medicago truncatula miR2680a 12 80
mtr-miR2627 MIMAT0013348 Medicago truncatula miR2627 12 80
sme-miR-2158-3p MIMAT0012149 Schmidtea mediterranea miR-2158-3p 12 80
ptr-miR-423 MIMAT0008142 Pan troglodytes miR-423 12 80
cel-miR-58b-5p MIMAT0020361 Caenorhabditis elegans miR-58b-5p 12 80
mml-miR-423-3p MIMAT0006322 Macaca mulatta miR-423-3p 12 80
rno-miR-423-3p MIMAT0005313 Rattus norvegicus miR-423-3p 12 80
ath-miR851-5p MIMAT0004273 Arabidopsis thaliana miR851-5p 12 80
mmu-miR-423-3p MIMAT0003454 Mus musculus miR-423-3p 12 80
mmu-miR-678 MIMAT0003452 Mus musculus miR-678 12 80
hsa-miR-423-3p MIMAT0001340 Homo sapiens miR-423-3p 12 80
>ppc-miR-8301-5p MIMAT0033121 Pristionchus pacificus miR-8301-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taccgag 7
|||||||
Sbjct: 1 taccgag 7
>hsa-miR-8088 MIMAT0031015 Homo sapiens miR-8088
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taccgag 7
|||||||
Sbjct: 8 taccgag 2
>hhv6b-miR-Ro6-4-3p MIMAT0026463 Human herpesvirus miR-Ro6-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taccgag 7
|||||||
Sbjct: 2 taccgag 8
>bmo-miR-2774b MIMAT0013661 Bombyx mori miR-2774b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taccgag 7
|||||||
Sbjct: 7 taccgag 1
>mcmv-miR-M23-1-5p MIMAT0005542 Mouse cytomegalovirus
miR-M23-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taccgag 7
|||||||
Sbjct: 7 taccgag 1
>tch-miR-423-3p MIMAT0036525 Tupaia chinensis miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>chi-miR-423-3p MIMAT0036221 Capra hircus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>bra-miR9552b-3p MIMAT0035656 Brassica rapa miR9552b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgag 7
||||||
Sbjct: 3 accgag 8
>gsa-miR-278-3p MIMAT0035295 Gyrodactylus salaris miR-278-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 6 accgag 1
>cfa-miR-8791a MIMAT0034281 Canis familiaris miR-8791a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>str-miR-7880m-5p MIMAT0033364 Strongyloides ratti miR-7880m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 8 taccga 3
>ppc-miR-8289-5p MIMAT0033091 Pristionchus pacificus miR-8289-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgag 7
||||||
Sbjct: 1 accgag 6
>cbr-miR-7591 MIMAT0029597 Caenorhabditis briggsae miR-7591
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 8 taccga 3
>prv-miR-LLT6 MIMAT0025309 Pseudorabies virus miR-LLT6
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taccga 6
||||||
Sbjct: 3 taccga 8
>cgr-miR-423-3p MIMAT0023957 Cricetulus griseus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>hhv6b-miR-Ro6-3-3p MIMAT0026461 Human herpesvirus miR-Ro6-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accgag 7
||||||
Sbjct: 3 accgag 8
>tur-miR-276-5p MIMAT0023034 Tetranychus urticae miR-276-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>tca-miR-252b-3p MIMAT0018807 Tribolium castaneum miR-252b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 6 accgag 1
>ame-miR-3715 MIMAT0018597 Apis mellifera miR-3715
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 6 taccga 1
>ppy-miR-423-3p MIMAT0015883 Pongo pygmaeus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>bmo-miR-3411 MIMAT0015617 Bombyx mori miR-3411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 6 taccga 1
>bmo-miR-3360 MIMAT0015546 Bombyx mori miR-3360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 8 taccga 3
>ssc-miR-423-3p MIMAT0013881 Sus scrofa miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>eca-miR-423-3p MIMAT0013040 Equus caballus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>bmo-miR-2774c MIMAT0013759 Bombyx mori miR-2774c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 6 accgag 1
>bmo-miR-2774a MIMAT0013658 Bombyx mori miR-2774a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 6 accgag 1
>mtr-miR2680e MIMAT0013514 Medicago truncatula miR2680e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mtr-miR2680d MIMAT0013513 Medicago truncatula miR2680d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mtr-miR2680c MIMAT0013512 Medicago truncatula miR2680c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mtr-miR2680b MIMAT0013511 Medicago truncatula miR2680b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mtr-miR2680a MIMAT0013510 Medicago truncatula miR2680a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mtr-miR2627 MIMAT0013348 Medicago truncatula miR2627
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 8 taccga 3
>sme-miR-2158-3p MIMAT0012149 Schmidtea mediterranea miR-2158-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taccga 6
||||||
Sbjct: 6 taccga 1
>ptr-miR-423 MIMAT0008142 Pan troglodytes miR-423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>cel-miR-58b-5p MIMAT0020361 Caenorhabditis elegans miR-58b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mml-miR-423-3p MIMAT0006322 Macaca mulatta miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>rno-miR-423-3p MIMAT0005313 Rattus norvegicus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>ath-miR851-5p MIMAT0004273 Arabidopsis thaliana miR851-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 7 accgag 2
>mmu-miR-423-3p MIMAT0003454 Mus musculus miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>mmu-miR-678 MIMAT0003452 Mus musculus miR-678
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
>hsa-miR-423-3p MIMAT0001340 Homo sapiens miR-423-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accgag 7
||||||
Sbjct: 8 accgag 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 64
Number of extensions: 59
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
