BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-26-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rlcv-miR-rL1-26-3p MIMAT0016950 Rhesus lymphocryptovirus miR-rL1...    16   6.9  
chi-miR-487b-3p MIMAT0036249 Capra hircus miR-487b-3p                  14      27
ggo-miR-487b MIMAT0024105 Gorilla gorilla miR-487b                     14      27
oar-miR-487b-3p MIMAT0019295 Ovis aries miR-487b-3p                    14      27
ppy-miR-487b MIMAT0015906 Pongo pygmaeus miR-487b                      14      27
eca-miR-487b MIMAT0013162 Equus caballus miR-487b                      14      27
cel-miR-2215-3p MIMAT0011446 Caenorhabditis elegans miR-2215-3p        14      27
ptr-miR-487b MIMAT0008162 Pan troglodytes miR-487b                     14      27
cfa-miR-487b MIMAT0006723 Canis familiaris miR-487b                    14      27
mml-miR-487b-3p MIMAT0006347 Macaca mulatta miR-487b-3p                14      27
oan-miR-1330 MIMAT0006800 Ornithorhynchus anatinus miR-1330            14      27
bta-miR-487b MIMAT0003847 Bos taurus miR-487b                          14      27
rno-miR-487b-3p MIMAT0003200 Rattus norvegicus miR-487b-3p             14      27
mmu-miR-487b-3p MIMAT0003184 Mus musculus miR-487b-3p                  14      27
hsa-miR-487b-3p MIMAT0003180 Homo sapiens miR-487b-3p                  14      27
>rlcv-miR-rL1-26-3p MIMAT0016950 Rhesus lymphocryptovirus
         miR-rL1-26-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tacgattc 8
         ||||||||
Sbjct: 1 tacgattc 8
>chi-miR-487b-3p MIMAT0036249 Capra hircus miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>ggo-miR-487b MIMAT0024105 Gorilla gorilla miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>oar-miR-487b-3p MIMAT0019295 Ovis aries miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>ppy-miR-487b MIMAT0015906 Pongo pygmaeus miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>eca-miR-487b MIMAT0013162 Equus caballus miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>cel-miR-2215-3p MIMAT0011446 Caenorhabditis elegans miR-2215-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 acgattc 8
         |||||||
Sbjct: 8 acgattc 2
>ptr-miR-487b MIMAT0008162 Pan troglodytes miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>cfa-miR-487b MIMAT0006723 Canis familiaris miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>mml-miR-487b-3p MIMAT0006347 Macaca mulatta miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>oan-miR-1330 MIMAT0006800 Ornithorhynchus anatinus miR-1330
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 2 tacgatt 8
>bta-miR-487b MIMAT0003847 Bos taurus miR-487b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>rno-miR-487b-3p MIMAT0003200 Rattus norvegicus miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>mmu-miR-487b-3p MIMAT0003184 Mus musculus miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
>hsa-miR-487b-3p MIMAT0003180 Homo sapiens miR-487b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tacgatt 7
         |||||||
Sbjct: 7 tacgatt 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 68
Number of extensions: 52
Number of successful extensions: 47
Number of sequences better than 100.0: 15
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)