BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-26-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-26-3p MIMAT0016950 Rhesus lymphocryptovirus miR-rL1... 16 6.9
chi-miR-487b-3p MIMAT0036249 Capra hircus miR-487b-3p 14 27
ggo-miR-487b MIMAT0024105 Gorilla gorilla miR-487b 14 27
oar-miR-487b-3p MIMAT0019295 Ovis aries miR-487b-3p 14 27
ppy-miR-487b MIMAT0015906 Pongo pygmaeus miR-487b 14 27
eca-miR-487b MIMAT0013162 Equus caballus miR-487b 14 27
cel-miR-2215-3p MIMAT0011446 Caenorhabditis elegans miR-2215-3p 14 27
ptr-miR-487b MIMAT0008162 Pan troglodytes miR-487b 14 27
cfa-miR-487b MIMAT0006723 Canis familiaris miR-487b 14 27
mml-miR-487b-3p MIMAT0006347 Macaca mulatta miR-487b-3p 14 27
oan-miR-1330 MIMAT0006800 Ornithorhynchus anatinus miR-1330 14 27
bta-miR-487b MIMAT0003847 Bos taurus miR-487b 14 27
rno-miR-487b-3p MIMAT0003200 Rattus norvegicus miR-487b-3p 14 27
mmu-miR-487b-3p MIMAT0003184 Mus musculus miR-487b-3p 14 27
hsa-miR-487b-3p MIMAT0003180 Homo sapiens miR-487b-3p 14 27
>rlcv-miR-rL1-26-3p MIMAT0016950 Rhesus lymphocryptovirus
miR-rL1-26-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tacgattc 8
||||||||
Sbjct: 1 tacgattc 8
>chi-miR-487b-3p MIMAT0036249 Capra hircus miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>ggo-miR-487b MIMAT0024105 Gorilla gorilla miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>oar-miR-487b-3p MIMAT0019295 Ovis aries miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>ppy-miR-487b MIMAT0015906 Pongo pygmaeus miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>eca-miR-487b MIMAT0013162 Equus caballus miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>cel-miR-2215-3p MIMAT0011446 Caenorhabditis elegans miR-2215-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acgattc 8
|||||||
Sbjct: 8 acgattc 2
>ptr-miR-487b MIMAT0008162 Pan troglodytes miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>cfa-miR-487b MIMAT0006723 Canis familiaris miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>mml-miR-487b-3p MIMAT0006347 Macaca mulatta miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>oan-miR-1330 MIMAT0006800 Ornithorhynchus anatinus miR-1330
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacgatt 7
|||||||
Sbjct: 2 tacgatt 8
>bta-miR-487b MIMAT0003847 Bos taurus miR-487b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>rno-miR-487b-3p MIMAT0003200 Rattus norvegicus miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>mmu-miR-487b-3p MIMAT0003184 Mus musculus miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
>hsa-miR-487b-3p MIMAT0003180 Homo sapiens miR-487b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tacgatt 7
|||||||
Sbjct: 7 tacgatt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 68
Number of extensions: 52
Number of successful extensions: 47
Number of sequences better than 100.0: 15
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)