BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2 14 20
gma-miR9735 MIMAT0036355 Glycine max miR9735 12 80
ppc-miR-42c-5p MIMAT0032888 Pristionchus pacificus miR-42c-5p 12 80
ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p 12 80
prd-miR-7928-5p MIMAT0030704 Panagrellus redivivus miR-7928-5p 12 80
mdo-miR-7250-5p MIMAT0028466 Monodelphis domestica miR-7250-5p 12 80
mmu-miR-7240-3p MIMAT0028449 Mus musculus miR-7240-3p 12 80
ccr-miR-738 MIMAT0026296 Cyprinus carpio miR-738 12 80
gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p 12 80
pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597 12 80
bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3 12 80
bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794 12 80
nve-miR-2031-5p MIMAT0009782 Nematostella vectensis miR-2031-5p 12 80
gma-miR171b-5p MIMAT0017336 Glycine max miR171b-5p 12 80
dre-miR-738 MIMAT0003769 Danio rerio miR-738 12 80
>rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tacggcg 7
|||||||
Sbjct: 2 tacggcg 8
>gma-miR9735 MIMAT0036355 Glycine max miR9735
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 1 tacggc 6
>ppc-miR-42c-5p MIMAT0032888 Pristionchus pacificus miR-42c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tacggc 6
||||||
Sbjct: 6 tacggc 1
>ppc-miR-8222-5p MIMAT0032878 Pristionchus pacificus miR-8222-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>prd-miR-7928-5p MIMAT0030704 Panagrellus redivivus miR-7928-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 3 tacggc 8
>mdo-miR-7250-5p MIMAT0028466 Monodelphis domestica miR-7250-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 1 tacggc 6
>mmu-miR-7240-3p MIMAT0028449 Mus musculus miR-7240-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggcg 7
||||||
Sbjct: 6 acggcg 1
>ccr-miR-738 MIMAT0026296 Cyprinus carpio miR-738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 3 tacggc 8
>gga-miR-6564-5p MIMAT0025633 Gallus gallus miR-6564-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggcg 7
||||||
Sbjct: 6 acggcg 1
>pma-miR-4597 MIMAT0019630 Petromyzon marinus miR-4597
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acggcg 7
||||||
Sbjct: 7 acggcg 2
>bhv1-miR-B3 MIMAT0013964 Bovine herpesvirus miR-B3
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 3 acggcg 8
>bmo-miR-2794 MIMAT0013694 Bombyx mori miR-2794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>nve-miR-2031-5p MIMAT0009782 Nematostella vectensis miR-2031-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 1 tacggc 6
>gma-miR171b-5p MIMAT0017336 Glycine max miR171b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acggcg 7
||||||
Sbjct: 1 acggcg 6
>dre-miR-738 MIMAT0003769 Danio rerio miR-738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tacggc 6
||||||
Sbjct: 3 tacggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 21
Number of extensions: 20
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
