BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-4-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

egr-miR-124b-5p MIMAT0020241 Echinococcus granulosus miR-124b-5p       16   6.9  
kshv-miR-K12-4-3p MIMAT0002192 Kaposi sarcoma-associated miR-K12...    16   6.9  
dvi-miR-964-5p MIMAT0035583 Drosophila virilis miR-964-5p              14      27
mdo-miR-7324-3p MIMAT0028649 Monodelphis domestica miR-7324-3p         14      27
ppy-miR-630 MIMAT0016069 Pongo pygmaeus miR-630                        14      27
dsi-miR-964-5p MIMAT0012475 Drosophila simulans miR-964-5p             14      27
ptr-miR-630 MIMAT0008288 Pan troglodytes miR-630                       14      27
dme-miR-964-5p MIMAT0005478 Drosophila melanogaster miR-964-5p         14      27
hsa-miR-630 MIMAT0003299 Homo sapiens miR-630                          14      27
>egr-miR-124b-5p MIMAT0020241 Echinococcus granulosus
         miR-124b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 tagaatac 8
         ||||||||
Sbjct: 8 tagaatac 1
>kshv-miR-K12-4-3p MIMAT0002192 Kaposi sarcoma-associated
         miR-K12-4-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagaatac 8
         ||||||||
Sbjct: 1 tagaatac 8
>dvi-miR-964-5p MIMAT0035583 Drosophila virilis miR-964-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagaata 7
         |||||||
Sbjct: 2 tagaata 8
>mdo-miR-7324-3p MIMAT0028649 Monodelphis domestica miR-7324-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagaata 7
         |||||||
Sbjct: 1 tagaata 7
>ppy-miR-630 MIMAT0016069 Pongo pygmaeus miR-630
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agaatac 8
         |||||||
Sbjct: 8 agaatac 2
>dsi-miR-964-5p MIMAT0012475 Drosophila simulans miR-964-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagaata 7
         |||||||
Sbjct: 2 tagaata 8
>ptr-miR-630 MIMAT0008288 Pan troglodytes miR-630
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agaatac 8
         |||||||
Sbjct: 8 agaatac 2
>dme-miR-964-5p MIMAT0005478 Drosophila melanogaster miR-964-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagaata 7
         |||||||
Sbjct: 2 tagaata 8
>hsa-miR-630 MIMAT0003299 Homo sapiens miR-630
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agaatac 8
         |||||||
Sbjct: 8 agaatac 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 100
Number of successful extensions: 90
Number of sequences better than 100.0: 9
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)