BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-9
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p 16 6.9
prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p 14 27
sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p 14 27
mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p 14 27
hsa-miR-5684 MIMAT0022473 Homo sapiens miR-5684 14 27
ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b 14 27
hsa-miR-4424 MIMAT0018939 Homo sapiens miR-4424 14 27
ppy-miR-618 MIMAT0016060 Pongo pygmaeus miR-618 14 27
aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p 14 27
ptr-miR-618 MIMAT0008280 Pan troglodytes miR-618 14 27
mml-miR-618 MIMAT0006468 Macaca mulatta miR-618 14 27
ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a 14 27
hsa-miR-618 MIMAT0003287 Homo sapiens miR-618 14 27
dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p 14 27
>mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tagagtta 8
||||||||
Sbjct: 8 tagagtta 1
>prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agagtta 8
|||||||
Sbjct: 7 agagtta 1
>sbi-miR437x-5p MIMAT0026406 Sorghum bicolor miR437x-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagagtt 7
|||||||
Sbjct: 1 tagagtt 7
>mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agagtta 8
|||||||
Sbjct: 7 agagtta 1
>hsa-miR-5684 MIMAT0022473 Homo sapiens miR-5684
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 7 tagagtt 1
>ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagagtt 7
|||||||
Sbjct: 2 tagagtt 8
>hsa-miR-4424 MIMAT0018939 Homo sapiens miR-4424
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agagtta 8
|||||||
Sbjct: 1 agagtta 7
>ppy-miR-618 MIMAT0016060 Pongo pygmaeus miR-618
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 8 tagagtt 2
>aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagagtt 7
|||||||
Sbjct: 2 tagagtt 8
>ptr-miR-618 MIMAT0008280 Pan troglodytes miR-618
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 8 tagagtt 2
>mml-miR-618 MIMAT0006468 Macaca mulatta miR-618
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 8 tagagtt 2
>ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagagtt 7
|||||||
Sbjct: 2 tagagtt 8
>hsa-miR-618 MIMAT0003287 Homo sapiens miR-618
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 8 tagagtt 2
>dre-miR-430b-5p MIMAT0031928 Danio rerio miR-430b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagagtt 7
|||||||
Sbjct: 8 tagagtt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 100
Number of extensions: 85
Number of successful extensions: 75
Number of sequences better than 100.0: 14
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
