BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-18-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus miR-rL1...    16   6.9  
gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691                   14      27
ppe-miR827 MIMAT0031516 Prunus persica miR827                          14      27
stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p                 14      27
mes-miR827 MIMAT0029302 Manihot esculenta miR827                       14      27
mdm-miR827 MIMAT0026028 Malus domestica miR827                         14      27
nta-miR827 MIMAT0024725 Nicotiana tabacum miR827                       14      27
hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971                14      27
ssp-miR827 MIMAT0020279 Saccharum sp. miR827                           14      27
bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p           14      27
tcc-miR827 MIMAT0020449 Theobroma cacao miR827                         14      27
csi-miR827 MIMAT0018485 Citrus sinensis miR827                         14      27
cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p            14      27
cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p            14      27
aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p                14      27
ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c                    14      27
ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b                    14      27
ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a                    14      27
zma-miR827-3p MIMAT0014031 Zea mays miR827-3p                          14      27
osa-miR827 MIMAT0009981 Oryza sativa miR827                            14      27
ptc-miR827 MIMAT0006003 Populus trichocarpa miR827                     14      27
oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371            14      27
ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827                    14      27
>rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus
         miR-rL1-18-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagatgat 8
         ||||||||
Sbjct: 1 tagatgat 8
>gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agatgat 8
         |||||||
Sbjct: 1 agatgat 7
>ppe-miR827 MIMAT0031516 Prunus persica miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>mes-miR827 MIMAT0029302 Manihot esculenta miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>mdm-miR827 MIMAT0026028 Malus domestica miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>nta-miR827 MIMAT0024725 Nicotiana tabacum miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>ssp-miR827 MIMAT0020279 Saccharum sp. miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>tcc-miR827 MIMAT0020449 Theobroma cacao miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>csi-miR827 MIMAT0018485 Citrus sinensis miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 1 tagatga 7
>aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>zma-miR827-3p MIMAT0014031 Zea mays miR827-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>osa-miR827 MIMAT0009981 Oryza sativa miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>ptc-miR827 MIMAT0006003 Populus trichocarpa miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
>oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 1 tagatga 7
>ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatga 7
         |||||||
Sbjct: 2 tagatga 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 164
Number of extensions: 140
Number of successful extensions: 123
Number of sequences better than 100.0: 23
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 23
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)