BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m24
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7743-5p MIMAT0030226 Brachypodium distachyon miR7743-5p 14 20
mdv2-miR-M24-3p MIMAT0004468 Mareks disease miR-M24-3p 14 20
tch-miR-9771h MIMAT0036547 Tupaia chinensis miR-9771h 12 80
chi-miR-708-3p MIMAT0036291 Capra hircus miR-708-3p 12 80
str-miR-8370-5p MIMAT0033360 Strongyloides ratti miR-8370-5p 12 80
bdi-miR7739-5p MIMAT0030214 Brachypodium distachyon miR7739-5p 12 80
mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p 12 80
bma-miR-5873 MIMAT0026372 Brugia malayi miR-5873 12 80
cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725 12 80
osa-miR5508 MIMAT0022141 Oryza sativa miR5508 12 80
isc-miR-5314 MIMAT0021385 Ixodes scapularis miR-5314 12 80
bdi-miR5173-3p MIMAT0027081 Brachypodium distachyon miR5173-3p 12 80
hsa-miR-4708-5p MIMAT0019809 Homo sapiens miR-4708-5p 12 80
pab-miR3709a MIMAT0018141 Picea abies miR3709a 12 80
cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p 12 80
rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p 12 80
rlcv-miR-rL1-34-5p MIMAT0016960 Rhesus lymphocryptovirus miR-rL1... 12 80
aly-miR828-3p MIMAT0017610 Arabidopsis lyrata miR828-3p 12 80
aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p 12 80
rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus miR-rL1... 12 80
dps-miR-2542-3p MIMAT0012341 Drosophila pseudoobscura miR-2542-3p 12 80
dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983 12 80
mmu-miR-1981-3p MIMAT0017351 Mus musculus miR-1981-3p 12 80
gga-miR-1560-3p MIMAT0007418 Gallus gallus miR-1560-3p 12 80
oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371 12 80
oan-miR-1339-5p MIMAT0006861 Ornithorhynchus anatinus miR-1339-5p 12 80
mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p 12 80
mmu-miR-680 MIMAT0003457 Mus musculus miR-680 12 80
ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p 12 80
>bdi-miR7743-5p MIMAT0030226 Brachypodium distachyon miR7743-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagatgc 7
|||||||
Sbjct: 8 tagatgc 2
>mdv2-miR-M24-3p MIMAT0004468 Mareks disease miR-M24-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagatgc 7
|||||||
Sbjct: 2 tagatgc 8
>tch-miR-9771h MIMAT0036547 Tupaia chinensis miR-9771h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>chi-miR-708-3p MIMAT0036291 Capra hircus miR-708-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagatg 6
||||||
Sbjct: 6 tagatg 1
>str-miR-8370-5p MIMAT0033360 Strongyloides ratti miR-8370-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>bdi-miR7739-5p MIMAT0030214 Brachypodium distachyon miR7739-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 3 agatgc 8
>bma-miR-5873 MIMAT0026372 Brugia malayi miR-5873
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 8 agatgc 3
>osa-miR5508 MIMAT0022141 Oryza sativa miR5508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>isc-miR-5314 MIMAT0021385 Ixodes scapularis miR-5314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 3 tagatg 8
>bdi-miR5173-3p MIMAT0027081 Brachypodium distachyon miR5173-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 7 agatgc 2
>hsa-miR-4708-5p MIMAT0019809 Homo sapiens miR-4708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 3 agatgc 8
>pab-miR3709a MIMAT0018141 Picea abies miR3709a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 3 agatgc 8
>cin-miR-4138-5p MIMAT0016735 Ciona intestinalis miR-4138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 3 agatgc 8
>rlcv-miR-rL1-34-5p MIMAT0016960 Rhesus lymphocryptovirus
miR-rL1-34-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>aly-miR828-3p MIMAT0017610 Arabidopsis lyrata miR828-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 8 agatgc 3
>rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus
miR-rL1-18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>dps-miR-2542-3p MIMAT0012341 Drosophila pseudoobscura
miR-2542-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>mmu-miR-1981-3p MIMAT0017351 Mus musculus miR-1981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagatg 6
||||||
Sbjct: 6 tagatg 1
>gga-miR-1560-3p MIMAT0007418 Gallus gallus miR-1560-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 6 agatgc 1
>oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagatg 6
||||||
Sbjct: 1 tagatg 6
>oan-miR-1339-5p MIMAT0006861 Ornithorhynchus anatinus
miR-1339-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agatgc 7
||||||
Sbjct: 1 agatgc 6
>mmu-miR-680 MIMAT0003457 Mus musculus miR-680
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 8 agatgc 3
>ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agatgc 7
||||||
Sbjct: 8 agatgc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 53
Number of extensions: 51
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
