BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv2-miR-m24-3p_-1_5
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bdi-miR7743-5p MIMAT0030226 Brachypodium distachyon miR7743-5p         14      27
cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725               14      27
aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p              14      27
dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983            14      27
mdv2-miR-M24-3p MIMAT0004468 Mareks disease miR-M24-3p                 14      27
mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p                 14      27
mmu-miR-680 MIMAT0003457 Mus musculus miR-680                          14      27
ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p            14      27
>bdi-miR7743-5p MIMAT0030226 Brachypodium distachyon miR7743-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tagatgc 7
         |||||||
Sbjct: 8 tagatgc 2
>cln-miR6725 MIMAT0027352 Cunninghamia lanceolata miR6725
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 8 agatgcc 2
>aly-miR399c-5p MIMAT0017575 Arabidopsis lyrata miR399c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 8 agatgcc 2
>dps-miR-3983 MIMAT0012282 Drosophila pseudoobscura miR-3983
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 1 agatgcc 7
>mdv2-miR-M24-3p MIMAT0004468 Mareks disease miR-M24-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagatgc 7
         |||||||
Sbjct: 2 tagatgc 8
>mdv2-miR-M16-3p MIMAT0012540 Mareks disease miR-M16-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 1 agatgcc 7
>mmu-miR-680 MIMAT0003457 Mus musculus miR-680
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 8 agatgcc 2
>ath-miR399c-5p MIMAT0031913 Arabidopsis thaliana miR399c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agatgcc 8
         |||||||
Sbjct: 8 agatgcc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 73
Number of extensions: 65
Number of successful extensions: 41
Number of sequences better than 100.0: 8
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)