BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart20-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p 16 6.9
efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370 14 27
ssa-miR-24a-4-5p MIMAT0032554 Salmo salar miR-24a-4-5p 14 27
gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p 14 27
ssc-miR-370 MIMAT0025373 Sus scrofa miR-370 14 27
mmu-miR-6350 MIMAT0025093 Mus musculus miR-6350 14 27
mmu-miR-6346 MIMAT0025089 Mus musculus miR-6346 14 27
ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370 14 27
mtr-miR5229b MIMAT0021214 Medicago truncatula miR5229b 14 27
mtr-miR5229a MIMAT0021213 Medicago truncatula miR5229a 14 27
hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p 14 27
oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p 14 27
ssc-miR-1271 MIMAT0017967 Sus scrofa miR-1271 14 27
cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p 14 27
ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370 14 27
tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p 14 27
eca-miR-370 MIMAT0013142 Equus caballus miR-370 14 27
cfa-miR-370 MIMAT0009889 Canis familiaris miR-370 14 27
bta-miR-370 MIMAT0009300 Bos taurus miR-370 14 27
ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370 14 27
mml-miR-374b-3p MIMAT0026860 Macaca mulatta miR-374b-3p 14 27
mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p 14 27
rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus miR-rL1... 14 27
rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p 14 27
mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p 14 27
hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p 14 27
>ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tagcaggc 8
||||||||
Sbjct: 1 tagcaggc 8
>efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>ssa-miR-24a-4-5p MIMAT0032554 Salmo salar miR-24a-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 8 agcaggc 2
>gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcaggc 8
|||||||
Sbjct: 2 agcaggc 8
>ssc-miR-370 MIMAT0025373 Sus scrofa miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>mmu-miR-6350 MIMAT0025093 Mus musculus miR-6350
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagg 7
|||||||
Sbjct: 1 tagcagg 7
>mmu-miR-6346 MIMAT0025089 Mus musculus miR-6346
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagg 7
|||||||
Sbjct: 1 tagcagg 7
>ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>mtr-miR5229b MIMAT0021214 Medicago truncatula miR5229b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagg 7
|||||||
Sbjct: 2 tagcagg 8
>mtr-miR5229a MIMAT0021213 Medicago truncatula miR5229a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagg 7
|||||||
Sbjct: 2 tagcagg 8
>hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcaggc 8
|||||||
Sbjct: 2 agcaggc 8
>oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>ssc-miR-1271 MIMAT0017967 Sus scrofa miR-1271
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 8 agcaggc 2
>cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 8 agcaggc 2
>eca-miR-370 MIMAT0013142 Equus caballus miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>cfa-miR-370 MIMAT0009889 Canis familiaris miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>bta-miR-370 MIMAT0009300 Bos taurus miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>mml-miR-374b-3p MIMAT0026860 Macaca mulatta miR-374b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagg 7
|||||||
Sbjct: 2 tagcagg 8
>mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus
miR-rL1-16-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcaggc 8
|||||||
Sbjct: 2 agcaggc 8
>rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
>hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcaggc 8
|||||||
Sbjct: 7 agcaggc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 327
Number of extensions: 300
Number of successful extensions: 277
Number of sequences better than 100.0: 26
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)