BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ebv-miR-bart20-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p              16   6.9  
efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370                      14      27
ssa-miR-24a-4-5p MIMAT0032554 Salmo salar miR-24a-4-5p                 14      27
gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p                 14      27
ssc-miR-370 MIMAT0025373 Sus scrofa miR-370                            14      27
mmu-miR-6350 MIMAT0025093 Mus musculus miR-6350                        14      27
mmu-miR-6346 MIMAT0025089 Mus musculus miR-6346                        14      27
ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370                       14      27
mtr-miR5229b MIMAT0021214 Medicago truncatula miR5229b                 14      27
mtr-miR5229a MIMAT0021213 Medicago truncatula miR5229a                 14      27
hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p                  14      27
oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p                      14      27
ssc-miR-1271 MIMAT0017967 Sus scrofa miR-1271                          14      27
cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p          14      27
ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370                        14      27
tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p           14      27
eca-miR-370 MIMAT0013142 Equus caballus miR-370                        14      27
cfa-miR-370 MIMAT0009889 Canis familiaris miR-370                      14      27
bta-miR-370 MIMAT0009300 Bos taurus miR-370                            14      27
ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370                       14      27
mml-miR-374b-3p MIMAT0026860 Macaca mulatta miR-374b-3p                14      27
mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p                  14      27
rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus miR-rL1...    14      27
rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p               14      27
mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p                    14      27
hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p                    14      27
>ebv-miR-BART20-5p MIMAT0003719 Epstein Barr miR-BART20-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tagcaggc 8
         ||||||||
Sbjct: 1 tagcaggc 8
>efu-miR-370 MIMAT0034931 Eptesicus fuscus miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>ssa-miR-24a-4-5p MIMAT0032554 Salmo salar miR-24a-4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 8 agcaggc 2
>gga-miR-6566-3p MIMAT0025638 Gallus gallus miR-6566-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 2 agcaggc 8
>ssc-miR-370 MIMAT0025373 Sus scrofa miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>mmu-miR-6350 MIMAT0025093 Mus musculus miR-6350
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagcagg 7
         |||||||
Sbjct: 1 tagcagg 7
>mmu-miR-6346 MIMAT0025089 Mus musculus miR-6346
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagcagg 7
         |||||||
Sbjct: 1 tagcagg 7
>ggo-miR-370 MIMAT0024182 Gorilla gorilla miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>mtr-miR5229b MIMAT0021214 Medicago truncatula miR5229b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagcagg 7
         |||||||
Sbjct: 2 tagcagg 8
>mtr-miR5229a MIMAT0021213 Medicago truncatula miR5229a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagcagg 7
         |||||||
Sbjct: 2 tagcagg 8
>hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 2 agcaggc 8
>oar-miR-370-3p MIMAT0019244 Ovis aries miR-370-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>ssc-miR-1271 MIMAT0017967 Sus scrofa miR-1271
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 8 agcaggc 2
>cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>ppy-miR-370 MIMAT0015857 Pongo pygmaeus miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 8 agcaggc 2
>eca-miR-370 MIMAT0013142 Equus caballus miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>cfa-miR-370 MIMAT0009889 Canis familiaris miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>bta-miR-370 MIMAT0009300 Bos taurus miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>ptr-miR-370 MIMAT0008120 Pan troglodytes miR-370
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>mml-miR-374b-3p MIMAT0026860 Macaca mulatta miR-374b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagcagg 7
         |||||||
Sbjct: 2 tagcagg 8
>mml-miR-370-3p MIMAT0006295 Macaca mulatta miR-370-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>rlcv-miR-rL1-16-5p MIMAT0003447 Rhesus lymphocryptovirus
         miR-rL1-16-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 2 agcaggc 8
>rno-miR-370-3p MIMAT0003122 Rattus norvegicus miR-370-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>mmu-miR-370-3p MIMAT0001095 Mus musculus miR-370-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
>hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 agcaggc 8
         |||||||
Sbjct: 7 agcaggc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 327
Number of extensions: 300
Number of successful extensions: 277
Number of sequences better than 100.0: 26
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)