BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-15
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8814 MIMAT0034304 Canis familiaris miR-8814 14 27
mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402 14 27
hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b 14 27
hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p 14 27
mmu-miR-5626-3p MIMAT0022382 Mus musculus miR-5626-3p 14 27
gga-miR-1796 MIMAT0007710 Gallus gallus miR-1796 14 27
cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p 14 27
odi-miR-1496 MIMAT0006049 Oikopleura dioica miR-1496 14 27
mcmv-miR-m59-1 MIMAT0005548 Mouse cytomegalovirus miR-m59-1 14 27
>cfa-miR-8814 MIMAT0034304 Canis familiaris miR-8814
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagt 7
|||||||
Sbjct: 2 tagcagt 8
>mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcagtt 8
|||||||
Sbjct: 2 agcagtt 8
>hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtt 8
|||||||
Sbjct: 7 agcagtt 1
>hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtt 8
|||||||
Sbjct: 7 agcagtt 1
>mmu-miR-5626-3p MIMAT0022382 Mus musculus miR-5626-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 agcagtt 8
|||||||
Sbjct: 2 agcagtt 8
>gga-miR-1796 MIMAT0007710 Gallus gallus miR-1796
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtt 8
|||||||
Sbjct: 8 agcagtt 2
>cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 agcagtt 8
|||||||
Sbjct: 7 agcagtt 1
>odi-miR-1496 MIMAT0006049 Oikopleura dioica miR-1496
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagt 7
|||||||
Sbjct: 1 tagcagt 7
>mcmv-miR-m59-1 MIMAT0005548 Mouse cytomegalovirus miR-m59-1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcagt 7
|||||||
Sbjct: 2 tagcagt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 278
Number of extensions: 269
Number of successful extensions: 236
Number of sequences better than 100.0: 9
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
