BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-18-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-8988 MIMAT0034525 Equus caballus miR-8988 14 20
gga-miR-6644-3p MIMAT0025745 Gallus gallus miR-6644-3p 14 20
ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943 14 20
ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943 14 20
ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943 14 20
hsa-miR-4489 MIMAT0019023 Homo sapiens miR-4489 14 20
hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943 14 20
pab-miR3697 MIMAT0018129 Picea abies miR3697 14 20
cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p 14 20
rlcv-miR-rL1-18-3p MIMAT0016941 Rhesus lymphocryptovirus miR-rL1... 14 20
gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p 14 20
rno-miR-762 MIMAT0035752 Rattus norvegicus miR-762 12 80
efu-miR-9304 MIMAT0034977 Eptesicus fuscus miR-9304 12 80
eca-miR-185 MIMAT0034461 Equus caballus miR-185 12 80
stu-miR399o-5p MIMAT0031322 Solanum tuberosum miR399o-5p 12 80
stu-miR399n-5p MIMAT0031320 Solanum tuberosum miR399n-5p 12 80
stu-miR399m-5p MIMAT0031318 Solanum tuberosum miR399m-5p 12 80
stu-miR399l-5p MIMAT0031316 Solanum tuberosum miR399l-5p 12 80
stu-miR399k-5p MIMAT0031314 Solanum tuberosum miR399k-5p 12 80
stu-miR399j-5p MIMAT0031312 Solanum tuberosum miR399j-5p 12 80
stu-miR399i-5p MIMAT0031260 Solanum tuberosum miR399i-5p 12 80
stu-miR399h MIMAT0030971 Solanum tuberosum miR399h 12 80
stu-miR399g-5p MIMAT0030970 Solanum tuberosum miR399g-5p 12 80
stu-miR399f-5p MIMAT0030969 Solanum tuberosum miR399f-5p 12 80
stu-miR399e-5p MIMAT0030968 Solanum tuberosum miR399e-5p 12 80
stu-miR399d-5p MIMAT0030967 Solanum tuberosum miR399d-5p 12 80
stu-miR399c-5p MIMAT0030966 Solanum tuberosum miR399c-5p 12 80
stu-miR399b-5p MIMAT0030965 Solanum tuberosum miR399b-5p 12 80
stu-miR399a-5p MIMAT0030964 Solanum tuberosum miR399a-5p 12 80
mdo-miR-7375-5p MIMAT0028796 Monodelphis domestica miR-7375-5p 12 80
mmu-miR-7083-5p MIMAT0028072 Mus musculus miR-7083-5p 12 80
hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p 12 80
hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p 12 80
hsa-miR-6813-5p MIMAT0027526 Homo sapiens miR-6813-5p 12 80
gga-miR-6609-3p MIMAT0025704 Gallus gallus miR-6609-3p 12 80
hsa-miR-6085 MIMAT0023710 Homo sapiens miR-6085 12 80
hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069 12 80
osa-miR5826 MIMAT0023300 Oryza sativa miR5826 12 80
mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273 12 80
gma-miR5042-3p MIMAT0032123 Glycine max miR5042-3p 12 80
dme-miR-4955-3p MIMAT0020172 Drosophila melanogaster miR-4955-3p 12 80
hsa-miR-4675 MIMAT0019757 Homo sapiens miR-4675 12 80
hsa-miR-4508 MIMAT0019045 Homo sapiens miR-4508 12 80
hsa-miR-4492 MIMAT0019027 Homo sapiens miR-4492 12 80
hsa-miR-3651 MIMAT0018071 Homo sapiens miR-3651 12 80
hsa-miR-4283 MIMAT0016914 Homo sapiens miR-4283 12 80
hsa-miR-4313 MIMAT0016865 Homo sapiens miR-4313 12 80
ppy-miR-1225-3p MIMAT0016161 Pongo pygmaeus miR-1225-3p 12 80
mmu-miR-3070-5p MIMAT0014846 Mus musculus miR-3070-5p 12 80
ptr-miR-762 MIMAT0012815 Pan troglodytes miR-762 12 80
mml-miR-762 MIMAT0012791 Macaca mulatta miR-762 12 80
bta-miR-2466-3p MIMAT0012055 Bos taurus miR-2466-3p 12 80
bta-miR-2412 MIMAT0011974 Bos taurus miR-2412 12 80
bta-miR-1584-5p MIMAT0011969 Bos taurus miR-1584-5p 12 80
bta-miR-2374 MIMAT0011920 Bos taurus miR-2374 12 80
crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p 12 80
ptr-miR-1225 MIMAT0007964 Pan troglodytes miR-1225 12 80
osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p 12 80
gga-miR-762 MIMAT0007752 Gallus gallus miR-762 12 80
mml-miR-210-5p MIMAT0026846 Macaca mulatta miR-210-5p 12 80
gga-miR-1674 MIMAT0007558 Gallus gallus miR-1674 12 80
hsa-miR-1225-3p MIMAT0005573 Homo sapiens miR-1225-3p 12 80
mmu-miR-762 MIMAT0003892 Mus musculus miR-762 12 80
hsa-miR-762 MIMAT0010313 Homo sapiens miR-762 12 80
hsa-miR-210-5p MIMAT0026475 Homo sapiens miR-210-5p 12 80
>eca-miR-8988 MIMAT0034525 Equus caballus miR-8988
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>gga-miR-6644-3p MIMAT0025745 Gallus gallus miR-6644-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagcccc 7
|||||||
Sbjct: 7 tagcccc 1
>ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>hsa-miR-4489 MIMAT0019023 Homo sapiens miR-4489
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagcccc 7
|||||||
Sbjct: 8 tagcccc 2
>hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>pab-miR3697 MIMAT0018129 Picea abies miR3697
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tagcccc 7
|||||||
Sbjct: 8 tagcccc 2
>rlcv-miR-rL1-18-3p MIMAT0016941 Rhesus lymphocryptovirus
miR-rL1-18-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 2 tagcccc 8
>gga-miR-1595-3p MIMAT0007459 Gallus gallus miR-1595-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tagcccc 7
|||||||
Sbjct: 1 tagcccc 7
>rno-miR-762 MIMAT0035752 Rattus norvegicus miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>efu-miR-9304 MIMAT0034977 Eptesicus fuscus miR-9304
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>eca-miR-185 MIMAT0034461 Equus caballus miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>stu-miR399o-5p MIMAT0031322 Solanum tuberosum miR399o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399n-5p MIMAT0031320 Solanum tuberosum miR399n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399m-5p MIMAT0031318 Solanum tuberosum miR399m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399l-5p MIMAT0031316 Solanum tuberosum miR399l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399k-5p MIMAT0031314 Solanum tuberosum miR399k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399j-5p MIMAT0031312 Solanum tuberosum miR399j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399i-5p MIMAT0031260 Solanum tuberosum miR399i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399h MIMAT0030971 Solanum tuberosum miR399h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399g-5p MIMAT0030970 Solanum tuberosum miR399g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399f-5p MIMAT0030969 Solanum tuberosum miR399f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399e-5p MIMAT0030968 Solanum tuberosum miR399e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399d-5p MIMAT0030967 Solanum tuberosum miR399d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399c-5p MIMAT0030966 Solanum tuberosum miR399c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399b-5p MIMAT0030965 Solanum tuberosum miR399b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>stu-miR399a-5p MIMAT0030964 Solanum tuberosum miR399a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>mdo-miR-7375-5p MIMAT0028796 Monodelphis domestica miR-7375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagccc 6
||||||
Sbjct: 1 tagccc 6
>mmu-miR-7083-5p MIMAT0028072 Mus musculus miR-7083-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>hsa-miR-6813-5p MIMAT0027526 Homo sapiens miR-6813-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>gga-miR-6609-3p MIMAT0025704 Gallus gallus miR-6609-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>hsa-miR-6085 MIMAT0023710 Homo sapiens miR-6085
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>hsa-miR-6069 MIMAT0023694 Homo sapiens miR-6069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>osa-miR5826 MIMAT0023300 Oryza sativa miR5826
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagccc 6
||||||
Sbjct: 1 tagccc 6
>mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>gma-miR5042-3p MIMAT0032123 Glycine max miR5042-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 7 agcccc 2
>dme-miR-4955-3p MIMAT0020172 Drosophila melanogaster
miR-4955-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 7 agcccc 2
>hsa-miR-4675 MIMAT0019757 Homo sapiens miR-4675
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>hsa-miR-4508 MIMAT0019045 Homo sapiens miR-4508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>hsa-miR-4492 MIMAT0019027 Homo sapiens miR-4492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>hsa-miR-3651 MIMAT0018071 Homo sapiens miR-3651
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tagccc 6
||||||
Sbjct: 3 tagccc 8
>hsa-miR-4283 MIMAT0016914 Homo sapiens miR-4283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 7 agcccc 2
>hsa-miR-4313 MIMAT0016865 Homo sapiens miR-4313
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 1 agcccc 6
>ppy-miR-1225-3p MIMAT0016161 Pongo pygmaeus miR-1225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>mmu-miR-3070-5p MIMAT0014846 Mus musculus miR-3070-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 1 agcccc 6
>ptr-miR-762 MIMAT0012815 Pan troglodytes miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>mml-miR-762 MIMAT0012791 Macaca mulatta miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>bta-miR-2466-3p MIMAT0012055 Bos taurus miR-2466-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>bta-miR-2412 MIMAT0011974 Bos taurus miR-2412
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>bta-miR-1584-5p MIMAT0011969 Bos taurus miR-1584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>bta-miR-2374 MIMAT0011920 Bos taurus miR-2374
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 8 agcccc 3
>crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 8 tagccc 3
>ptr-miR-1225 MIMAT0007964 Pan troglodytes miR-1225
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>osa-miR1874-5p MIMAT0007827 Oryza sativa miR1874-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 8 tagccc 3
>gga-miR-762 MIMAT0007752 Gallus gallus miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>mml-miR-210-5p MIMAT0026846 Macaca mulatta miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 1 agcccc 6
>gga-miR-1674 MIMAT0007558 Gallus gallus miR-1674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tagccc 6
||||||
Sbjct: 6 tagccc 1
>hsa-miR-1225-3p MIMAT0005573 Homo sapiens miR-1225-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 3 agcccc 8
>mmu-miR-762 MIMAT0003892 Mus musculus miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>hsa-miR-762 MIMAT0010313 Homo sapiens miR-762
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 agcccc 7
||||||
Sbjct: 6 agcccc 1
>hsa-miR-210-5p MIMAT0026475 Homo sapiens miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 agcccc 7
||||||
Sbjct: 1 agcccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 92
Number of extensions: 81
Number of successful extensions: 65
Number of sequences better than 100.0: 65
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 65
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
