BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m17
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv2-miR-M17-3p MIMAT0004457 Mareks disease miR-M17-3p 16 6.9
chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p 14 27
efu-miR-9225 MIMAT0034827 Eptesicus fuscus miR-9225 14 27
cel-miR-8207-5p MIMAT0032831 Caenorhabditis elegans miR-8207-5p 14 27
prd-miR-7957c-5p MIMAT0030822 Panagrellus redivivus miR-7957c-5p 14 27
bma-miR-5881b MIMAT0026383 Brugia malayi miR-5881b 14 27
mmu-miR-6899-3p MIMAT0027699 Mus musculus miR-6899-3p 14 27
gga-miR-6603-3p MIMAT0025697 Gallus gallus miR-6603-3p 14 27
ggo-miR-676 MIMAT0024273 Gorilla gorilla miR-676 14 27
ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197 14 27
ptr-miR-676 MIMAT0024049 Pan troglodytes miR-676 14 27
mtr-miR5286a MIMAT0021346 Medicago truncatula miR5286a 14 27
oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p 14 27
hsa-miR-676-3p MIMAT0018204 Homo sapiens miR-676-3p 14 27
ame-miR-3786 MIMAT0018565 Apis mellifera miR-3786 14 27
hsa-miR-2355-3p MIMAT0017950 Homo sapiens miR-2355-3p 14 27
ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197 14 27
hsv2-miR-H11-3p MIMAT0014698 Herpes Simplex miR-H11-3p 14 27
hsv1-miR-H11 MIMAT0014688 Herpes Simplex miR-H11 14 27
eca-miR-1197 MIMAT0013125 Equus caballus miR-1197 14 27
bta-miR-2355-3p MIMAT0011892 Bos taurus miR-2355-3p 14 27
bta-miR-1197 MIMAT0009966 Bos taurus miR-1197 14 27
ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197 14 27
hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197 14 27
mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p 14 27
>mdv2-miR-M17-3p MIMAT0004457 Mareks disease miR-M17-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taggacaa 8
||||||||
Sbjct: 1 taggacaa 8
>chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>efu-miR-9225 MIMAT0034827 Eptesicus fuscus miR-9225
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggacaa 8
|||||||
Sbjct: 1 aggacaa 7
>cel-miR-8207-5p MIMAT0032831 Caenorhabditis elegans miR-8207-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 7 aggacaa 1
>prd-miR-7957c-5p MIMAT0030822 Panagrellus redivivus
miR-7957c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 8 aggacaa 2
>bma-miR-5881b MIMAT0026383 Brugia malayi miR-5881b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggacaa 8
|||||||
Sbjct: 1 aggacaa 7
>mmu-miR-6899-3p MIMAT0027699 Mus musculus miR-6899-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 7 aggacaa 1
>gga-miR-6603-3p MIMAT0025697 Gallus gallus miR-6603-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggacaa 8
|||||||
Sbjct: 2 aggacaa 8
>ggo-miR-676 MIMAT0024273 Gorilla gorilla miR-676
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggaca 7
|||||||
Sbjct: 8 taggaca 2
>ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>ptr-miR-676 MIMAT0024049 Pan troglodytes miR-676
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggaca 7
|||||||
Sbjct: 8 taggaca 2
>mtr-miR5286a MIMAT0021346 Medicago truncatula miR5286a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggacaa 8
|||||||
Sbjct: 2 aggacaa 8
>oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>hsa-miR-676-3p MIMAT0018204 Homo sapiens miR-676-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggaca 7
|||||||
Sbjct: 8 taggaca 2
>ame-miR-3786 MIMAT0018565 Apis mellifera miR-3786
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 8 aggacaa 2
>hsa-miR-2355-3p MIMAT0017950 Homo sapiens miR-2355-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 8 aggacaa 2
>ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>hsv2-miR-H11-3p MIMAT0014698 Herpes Simplex miR-H11-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 2 taggaca 8
>hsv1-miR-H11 MIMAT0014688 Herpes Simplex miR-H11
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 2 taggaca 8
>eca-miR-1197 MIMAT0013125 Equus caballus miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>bta-miR-2355-3p MIMAT0011892 Bos taurus miR-2355-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggacaa 8
|||||||
Sbjct: 8 aggacaa 2
>bta-miR-1197 MIMAT0009966 Bos taurus miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
>mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggaca 7
|||||||
Sbjct: 1 taggaca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 130
Number of extensions: 104
Number of successful extensions: 78
Number of sequences better than 100.0: 25
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
