BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h12
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-676 MIMAT0034705 Equus caballus miR-676 14 20
ppy-miR-676 MIMAT0024365 Pongo pygmaeus miR-676 14 20
mml-miR-676-3p MIMAT0024325 Macaca mulatta miR-676-3p 14 20
hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12 14 20
ssc-miR-676-3p MIMAT0013943 Sus scrofa miR-676-3p 14 20
chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p 12 80
dvi-miR-311-5p MIMAT0035566 Drosophila virilis miR-311-5p 12 80
cfa-miR-8900 MIMAT0034410 Canis familiaris miR-8900 12 80
ptc-miR7827 MIMAT0030403 Populus trichocarpa miR7827 12 80
hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196 12 80
nta-miR6153 MIMAT0024754 Nicotiana tabacum miR6153 12 80
ggo-miR-676 MIMAT0024273 Gorilla gorilla miR-676 12 80
ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197 12 80
ptr-miR-676 MIMAT0024049 Pan troglodytes miR-676 12 80
hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p 12 80
osa-miR5819 MIMAT0023292 Oryza sativa miR5819 12 80
osa-miR5793 MIMAT0023260 Oryza sativa miR5793 12 80
hsa-miR-5571-3p MIMAT0022258 Homo sapiens miR-5571-3p 12 80
aca-miR-5433 MIMAT0022054 Anolis carolinensis miR-5433 12 80
asu-miR-236-5p MIMAT0021505 Ascaris suum miR-236-5p 12 80
rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332 12 80
hsa-miR-4759 MIMAT0019905 Homo sapiens miR-4759 12 80
oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p 12 80
hsa-miR-676-3p MIMAT0018204 Homo sapiens miR-676-3p 12 80
ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197 12 80
hsa-miR-3169 MIMAT0015044 Homo sapiens miR-3169 12 80
osa-miR2867-3p MIMAT0020947 Oryza sativa miR2867-3p 12 80
eca-miR-1197 MIMAT0013125 Equus caballus miR-1197 12 80
bmo-miR-2775b MIMAT0013745 Bombyx mori miR-2775b 12 80
bta-miR-1197 MIMAT0009966 Bos taurus miR-1197 12 80
mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p 12 80
dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p 12 80
ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197 12 80
gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694 12 80
oan-miR-1421m-5p MIMAT0007072 Ornithorhynchus anatinus miR-1421m-5p 12 80
hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197 12 80
mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p 12 80
cre-miR1143-5p MIMAT0005377 Chlamydomonas reinhardtii miR1143-5p 12 80
tae-miR1124 MIMAT0005359 Triticum aestivum miR1124 12 80
mdv2-miR-M17-3p MIMAT0004457 Mareks disease miR-M17-3p 12 80
hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D 12 80
dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p 12 80
cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p 12 80
>eca-miR-676 MIMAT0034705 Equus caballus miR-676
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggacg 7
|||||||
Sbjct: 8 taggacg 2
>ppy-miR-676 MIMAT0024365 Pongo pygmaeus miR-676
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggacg 7
|||||||
Sbjct: 8 taggacg 2
>mml-miR-676-3p MIMAT0024325 Macaca mulatta miR-676-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggacg 7
|||||||
Sbjct: 8 taggacg 2
>hsv2-miR-H12 MIMAT0014699 Herpes Simplex miR-H12
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggacg 7
|||||||
Sbjct: 2 taggacg 8
>ssc-miR-676-3p MIMAT0013943 Sus scrofa miR-676-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 taggacg 7
|||||||
Sbjct: 8 taggacg 2
>chi-miR-1197-3p MIMAT0035917 Capra hircus miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>dvi-miR-311-5p MIMAT0035566 Drosophila virilis miR-311-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>cfa-miR-8900 MIMAT0034410 Canis familiaris miR-8900
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>ptc-miR7827 MIMAT0030403 Populus trichocarpa miR7827
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 3 taggac 8
>hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>nta-miR6153 MIMAT0024754 Nicotiana tabacum miR6153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>ggo-miR-676 MIMAT0024273 Gorilla gorilla miR-676
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggac 6
||||||
Sbjct: 8 taggac 3
>ggo-miR-1197 MIMAT0024245 Gorilla gorilla miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>ptr-miR-676 MIMAT0024049 Pan troglodytes miR-676
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggac 6
||||||
Sbjct: 8 taggac 3
>hco-miR-5890b-5p MIMAT0023370 Haemonchus contortus miR-5890b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 3 taggac 8
>osa-miR5819 MIMAT0023292 Oryza sativa miR5819
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>osa-miR5793 MIMAT0023260 Oryza sativa miR5793
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 3 aggacg 8
>hsa-miR-5571-3p MIMAT0022258 Homo sapiens miR-5571-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggac 6
||||||
Sbjct: 6 taggac 1
>aca-miR-5433 MIMAT0022054 Anolis carolinensis miR-5433
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 3 taggac 8
>asu-miR-236-5p MIMAT0021505 Ascaris suum miR-236-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggac 6
||||||
Sbjct: 6 taggac 1
>rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacg 7
||||||
Sbjct: 7 aggacg 2
>hsa-miR-4759 MIMAT0019905 Homo sapiens miR-4759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>oar-miR-1197-3p MIMAT0019258 Ovis aries miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>hsa-miR-676-3p MIMAT0018204 Homo sapiens miR-676-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 taggac 6
||||||
Sbjct: 8 taggac 3
>ppy-miR-1197 MIMAT0016149 Pongo pygmaeus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>hsa-miR-3169 MIMAT0015044 Homo sapiens miR-3169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>osa-miR2867-3p MIMAT0020947 Oryza sativa miR2867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 3 aggacg 8
>eca-miR-1197 MIMAT0013125 Equus caballus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>bmo-miR-2775b MIMAT0013745 Bombyx mori miR-2775b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 3 taggac 8
>bta-miR-1197 MIMAT0009966 Bos taurus miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>dvi-miR-92a-5p MIMAT0032099 Drosophila virilis miR-92a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>ptr-miR-1197 MIMAT0007954 Pan troglodytes miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 3 aggacg 8
>oan-miR-1421m-5p MIMAT0007072 Ornithorhynchus anatinus
miR-1421m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>hsa-miR-1197 MIMAT0005955 Homo sapiens miR-1197
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>mmu-miR-1197-3p MIMAT0005858 Mus musculus miR-1197-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>cre-miR1143-5p MIMAT0005377 Chlamydomonas reinhardtii
miR1143-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>tae-miR1124 MIMAT0005359 Triticum aestivum miR1124
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 3 aggacg 8
>mdv2-miR-M17-3p MIMAT0004457 Mareks disease miR-M17-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 taggac 6
||||||
Sbjct: 1 taggac 6
>hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacg 7
||||||
Sbjct: 7 aggacg 2
>dme-miR-92a-5p MIMAT0020802 Drosophila melanogaster miR-92a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aggacg 7
||||||
Sbjct: 1 aggacg 6
>cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aggacg 7
||||||
Sbjct: 7 aggacg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 62
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
