BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
kshv-miR-K12-5-3p MIMAT0002190 Kaposi sarcoma-associated miR-K12... 16 6.9
gra-miR8694b MIMAT0034075 Gossypium raimondii miR8694b 14 27
gra-miR8694a MIMAT0034074 Gossypium raimondii miR8694a 14 27
rgl-miR7808 MIMAT0032254 Rehmannia glutinosa miR7808 14 27
hbr-miR6485 MIMAT0025295 Hevea brasiliensis miR6485 14 27
mmu-miR-6381 MIMAT0025127 Mus musculus miR-6381 14 27
ptr-miR-2392 MIMAT0024037 Pan troglodytes miR-2392 14 27
cin-miR-5605-3p MIMAT0022338 Ciona intestinalis miR-5605-3p 14 27
hsa-miR-2392 MIMAT0019043 Homo sapiens miR-2392 14 27
tca-miR-3821-5p MIMAT0018668 Tribolium castaneum miR-3821-5p 14 27
cin-miR-4058-5p MIMAT0016605 Ciona intestinalis miR-4058-5p 14 27
dps-miR-2503 MIMAT0012287 Drosophila pseudoobscura miR-2503 14 27
gga-miR-1618-5p MIMAT0026776 Gallus gallus miR-1618-5p 14 27
mdo-miR-1548-3p MIMAT0006148 Monodelphis domestica miR-1548-3p 14 27
>kshv-miR-K12-5-3p MIMAT0002190 Kaposi sarcoma-associated
miR-K12-5-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 taggatgc 8
||||||||
Sbjct: 1 taggatgc 8
>gra-miR8694b MIMAT0034075 Gossypium raimondii miR8694b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 1 aggatgc 7
>gra-miR8694a MIMAT0034074 Gossypium raimondii miR8694a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 1 aggatgc 7
>rgl-miR7808 MIMAT0032254 Rehmannia glutinosa miR7808
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 2 aggatgc 8
>hbr-miR6485 MIMAT0025295 Hevea brasiliensis miR6485
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggatg 7
|||||||
Sbjct: 1 taggatg 7
>mmu-miR-6381 MIMAT0025127 Mus musculus miR-6381
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 2 aggatgc 8
>ptr-miR-2392 MIMAT0024037 Pan troglodytes miR-2392
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggatg 7
|||||||
Sbjct: 1 taggatg 7
>cin-miR-5605-3p MIMAT0022338 Ciona intestinalis miR-5605-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggatg 7
|||||||
Sbjct: 1 taggatg 7
>hsa-miR-2392 MIMAT0019043 Homo sapiens miR-2392
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 taggatg 7
|||||||
Sbjct: 1 taggatg 7
>tca-miR-3821-5p MIMAT0018668 Tribolium castaneum miR-3821-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggatgc 8
|||||||
Sbjct: 8 aggatgc 2
>cin-miR-4058-5p MIMAT0016605 Ciona intestinalis miR-4058-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 2 aggatgc 8
>dps-miR-2503 MIMAT0012287 Drosophila pseudoobscura miR-2503
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aggatgc 8
|||||||
Sbjct: 1 aggatgc 7
>gga-miR-1618-5p MIMAT0026776 Gallus gallus miR-1618-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggatgc 8
|||||||
Sbjct: 8 aggatgc 2
>mdo-miR-1548-3p MIMAT0006148 Monodelphis domestica miR-1548-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aggatgc 8
|||||||
Sbjct: 8 aggatgc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 104
Number of successful extensions: 67
Number of sequences better than 100.0: 14
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
